Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_125830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_125830.1 0 3.00 3.31 -4.80 -4.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125830.1 SmLINC06646-IBu 0.88 1.01e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_034840.1 0 12.23 13.88 0.0 0.0
Smp_059530.1 0 2.86 3.32 -11.1 -11.1
Smp_083380.2 0 9.13 10.31 0.0 0.0
Smp_125830.1 0 3.00 3.31 -4.8 -4.8

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125830.1 Smp_034840.1 0.90 4.18e-06 1.00e-04
Smp_059530.1 Smp_125830.1 0.91 1.56e-06 7.31e-05
Smp_125830.1 Smp_083380.2 0.94 1.15e-07 1.19e-05