Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_125300.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
Smp_125300.2 0 9.64 8.74 10.87 9.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125300.2 SmLINC04953-IBu 0.81 1.00e-04 2.20e-03
Smp_125300.2 SmLINC05171-IBu 0.81 2.00e-04 2.50e-03
Smp_125300.2 SmLINC06536-IBu 0.81 2.00e-04 2.50e-03