Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_125140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_125140.1 0 -0.33 -4.66 -7.65 -4.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125140.1 SmLINC00037-IBu 0.90 4.74e-06 1.00e-04
Smp_125140.1 SmLINC00133-IBu 0.90 3.85e-06 1.00e-04
Smp_125140.1 SmLINC00282-IBu 0.92 6.15e-07 3.64e-05
Smp_125140.1 SmLINC00784-IBu 0.85 4.27e-05 7.00e-04
Smp_125140.1 SmLINC01462-IBu 0.83 1.00e-04 1.40e-03
Smp_125140.1 SmLINC01486-IBu 0.85 5.59e-05 9.00e-04
Smp_125140.1 SmLINC01637-IBu 0.86 2.85e-05 5.00e-04
Smp_125140.1 SmLINC02038-IBu 0.83 1.00e-04 1.50e-03
Smp_125140.1 SmLINC02255-IBu 0.80 2.00e-04 3.10e-03
Smp_125140.1 SmLINC03056-IBu 0.86 2.64e-05 5.00e-04
Smp_125140.1 SmLINC03362-IBu 0.82 1.00e-04 1.90e-03
Smp_125140.1 SmLINC03769-IBu 0.87 1.85e-05 4.00e-04
Smp_125140.1 SmLINC03848-IBu 0.95 2.02e-08 3.43e-06
Smp_125140.1 SmLINC03930-IBu 0.88 9.79e-06 2.00e-04
Smp_125140.1 SmLINC04075-IBu 0.83 1.00e-04 1.60e-03
Smp_125140.1 SmLINC04366-IBu 0.85 4.23e-05 7.00e-04
Smp_125140.1 SmLINC05284-IBu 0.87 2.18e-05 4.00e-04
Smp_125140.1 SmLINC05716-IBu 0.85 5.82e-05 9.00e-04
Smp_125140.1 SmLINC06535-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_125140.1 0 -0.33 -4.66 -7.65 -4.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 Smp_125140.1 0.90 3.39e-06 1.00e-04
Smp_125140.1 Smp_032320.1 0.92 1.02e-06 5.43e-05
Smp_125140.1 Smp_036270.4 0.93 3.28e-07 2.45e-05
Smp_111640.1 Smp_125140.1 0.91 2.33e-06 9.71e-05
Smp_112090.1 Smp_125140.1 0.97 1.81e-10 1.70e-07