Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_125090.1 Data

Correlation between Smp_125090.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125090.1 SmLINC04271-IBu 0.54 3.49e-02 8.59e-02

Correlation between Smp_125090.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125090.1 SmLINC00376-IBu -0.80 2.00e-04 3.00e-03
Smp_125090.1 SmLINC02255-IBu 0.93 3.20e-07 2.30e-05
Smp_125090.1 SmLINC02630-IBu 0.91 2.36e-06 9.45e-05
Smp_125090.1 SmLINC02657-IBu 0.89 6.91e-06 2.00e-04
Smp_125090.1 SmLINC03769-IBu 0.89 5.81e-06 1.00e-04
Smp_125090.1 SmLINC04957-IBu 0.81 2.00e-04 2.40e-03
Smp_125090.1 SmLINC05284-IBu 0.85 4.73e-05 8.00e-04
Smp_125090.1 SmLINC05989-IBu 0.93 4.90e-07 3.10e-05
Smp_125090.1 SmLINC05990-IBu -0.81 2.00e-04 2.70e-03
Smp_125090.1 SmLINC06128-IBu 0.93 4.63e-07 2.98e-05
Smp_125090.1 SmLINC06535-IBu 0.84 7.32e-05 1.10e-03
Smp_125090.1 SmLINC06890-IBu 0.83 1.00e-04 1.50e-03
Smp_125090.1 SmLINC06903-IBu 0.89 5.11e-06 1.00e-04

Correlation between Smp_125090.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 Smp_125090.1 0.91 1.68e-06 7.71e-05
Smp_125090.1 Smp_035090.2 0.95 3.79e-08 5.60e-06
Smp_125090.1 Smp_051230.4 0.90 3.98e-06 1.00e-04
Smp_125090.1 Smp_055340.2 -0.90 4.61e-06 1.00e-04
Smp_125090.1 Smp_109240.1 0.91 1.63e-06 7.54e-05
Smp_125090.1 Smp_134410.1 0.93 2.92e-07 2.26e-05
Smp_125090.1 Smp_149670.1 0.94 1.59e-07 1.49e-05
Smp_206200.1 Smp_125090.1 0.91 1.57e-06 7.35e-05