Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_125010.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_125010.1 0 2.81 -1.83 1.12 5.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125010.1 SmLINC00007-IBu 0.80 2.00e-04 2.90e-03
Smp_125010.1 SmLINC01520-IBu 0.86 3.49e-05 6.00e-04
Smp_125010.1 SmLINC02029-IBu 0.87 2.48e-05 5.00e-04
Smp_125010.1 SmLINC02539-IBu 0.80 3.00e-04 3.20e-03
Smp_125010.1 SmLINC02577-IBu 0.83 1.00e-04 1.40e-03
Smp_125010.1 SmLINC02776-IBu 0.80 2.00e-04 2.70e-03
Smp_125010.1 SmLINC02783-IBu 0.84 6.11e-05 9.00e-04
Smp_125010.1 SmLINC02786-IBu 0.93 3.26e-07 2.33e-05
Smp_125010.1 SmLINC03658-IBu 0.85 5.05e-05 8.00e-04
Smp_125010.1 SmLINC04235-IBu 0.82 1.00e-04 1.80e-03
Smp_125010.1 SmLINC04237-IBu 0.82 1.00e-04 1.90e-03
Smp_125010.1 SmLINC04896-IBu 0.87 1.52e-05 3.00e-04
Smp_125010.1 SmLINC05404-IBu 0.89 6.36e-06 1.00e-04
Smp_125010.1 SmLINC05684-IBu 0.88 1.42e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_125010.1 0 2.81 -1.83 1.12 5.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_170840.1 0 3.57 0.00 5.93 11.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125010.1 Smp_041540.1 0.94 1.62e-07 1.50e-05
Smp_125010.1 Smp_070540.1 0.92 5.97e-07 3.71e-05
Smp_125010.1 Smp_105450.1 0.91 2.47e-06 1.00e-04
Smp_125010.1 Smp_105450.2 0.90 4.46e-06 1.00e-04
Smp_126340.1 Smp_125010.1 0.92 1.00e-06 5.36e-05
Smp_137460.1 Smp_125010.1 0.90 3.29e-06 1.00e-04
Smp_152150.1 Smp_125010.1 0.91 1.26e-06 6.29e-05
Smp_164400.1 Smp_125010.1 0.92 7.40e-07 4.32e-05
Smp_125010.1 Smp_170840.1 0.90 3.39e-06 1.00e-04