Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_124830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_124830.1 0 -0.28 -9.93 -2.55 -3.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_124830.1 SmLINC00037-IBu 0.82 1.00e-04 1.90e-03
Smp_124830.1 SmLINC00133-IBu 0.84 7.41e-05 1.10e-03
Smp_124830.1 SmLINC00282-IBu 0.86 2.66e-05 5.00e-04
Smp_124830.1 SmLINC00784-IBu 0.87 1.80e-05 4.00e-04
Smp_124830.1 SmLINC01486-IBu 0.81 2.00e-04 2.40e-03
Smp_124830.1 SmLINC03056-IBu 0.80 3.00e-04 3.20e-03
Smp_124830.1 SmLINC03848-IBu 0.93 1.94e-07 1.62e-05
Smp_124830.1 SmLINC03930-IBu 0.84 6.04e-05 9.00e-04
Smp_124830.1 SmLINC04366-IBu 0.83 9.28e-05 1.30e-03
Smp_124830.1 SmLINC05284-IBu 0.81 2.00e-04 2.70e-03
Smp_124830.1 SmLINC06535-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_124830.1 0 -0.28 -9.93 -2.55 -3.33
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_001830.2 Smp_124830.1 0.92 7.89e-07 4.51e-05
Smp_032970.1 Smp_124830.1 0.91 1.20e-06 6.09e-05
Smp_036270.4 Smp_124830.1 0.90 4.44e-06 1.00e-04
Smp_112090.1 Smp_124830.1 0.92 9.82e-07 5.27e-05
Smp_168080.2 Smp_124830.1 0.91 1.92e-06 8.46e-05
Smp_182090.1 Smp_124830.1 0.92 6.24e-07 3.83e-05