Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_124820.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
Smp_124820.2 0 10.53 13.23 12.64 12.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_124820.2 SmLINC05632-IBu 0.81 2.00e-04 2.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010720.1 0 1.72 4.75 5.67 5.81
Smp_021750.1 0 9.17 10.52 10.13 10.60
Smp_041190.1 0 2.03 4.72 4.64 4.77
Smp_043820.1 0 1.49 3.31 4.56 4.81
Smp_055640.1 0 1.44 3.41 4.52 4.57
Smp_070020.1 0 0.03 4.30 3.67 3.27
Smp_094560.1 0 1.41 5.48 4.47 5.40
Smp_105220.1 0 1.94 5.32 4.66 4.77
Smp_124820.2 0 10.53 13.23 12.64 12.90
Smp_134570.1 0 1.52 5.26 4.16 3.39
Smp_138510.1 0 1.54 4.65 4.95 4.85
Smp_168720.1 0 3.16 5.91 6.34 5.21
Smp_198690.1 0 0.21 4.21 3.40 3.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010720.1 Smp_124820.2 0.92 1.05e-06 5.55e-05
Smp_021750.1 Smp_124820.2 0.90 3.53e-06 1.00e-04
Smp_041190.1 Smp_124820.2 0.94 9.30e-08 1.03e-05
Smp_043820.1 Smp_124820.2 0.94 1.67e-07 1.54e-05
Smp_055640.1 Smp_124820.2 0.94 6.55e-08 8.11e-06
Smp_070020.1 Smp_124820.2 0.92 1.10e-06 5.71e-05
Smp_094560.1 Smp_124820.2 0.90 4.15e-06 1.00e-04
Smp_105220.1 Smp_124820.2 0.90 4.20e-06 1.00e-04
Smp_134570.1 Smp_124820.2 0.92 1.11e-06 5.76e-05
Smp_138510.1 Smp_124820.2 0.92 5.51e-07 3.51e-05
Smp_168720.1 Smp_124820.2 0.93 3.40e-07 2.51e-05
Smp_198690.1 Smp_124820.2 0.91 2.09e-06 8.98e-05