Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_124750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_124750.1 0 -0.94 -0.07 1.14 6.20

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_124750.1 SmLINC00001-IBu 0.81 1.00e-04 2.10e-03
Smp_124750.1 SmLINC00007-IBu 0.93 4.02e-07 2.70e-05
Smp_124750.1 SmLINC01520-IBu 0.94 1.26e-07 1.21e-05
Smp_124750.1 SmLINC02029-IBu 0.94 1.21e-07 1.17e-05
Smp_124750.1 SmLINC02539-IBu 0.91 2.16e-06 8.88e-05
Smp_124750.1 SmLINC02540-IBu 0.89 7.09e-06 2.00e-04
Smp_124750.1 SmLINC02577-IBu 0.93 3.01e-07 2.20e-05
Smp_124750.1 SmLINC02776-IBu 0.94 1.55e-07 1.39e-05
Smp_124750.1 SmLINC02783-IBu 0.95 3.26e-08 4.76e-06
Smp_124750.1 SmLINC02786-IBu 0.99 4.38e-13 3.56e-09
Smp_124750.1 SmLINC03326-IBu 0.84 8.31e-05 1.20e-03
Smp_124750.1 SmLINC03658-IBu 0.87 1.57e-05 3.00e-04
Smp_124750.1 SmLINC04235-IBu 0.87 2.20e-05 4.00e-04
Smp_124750.1 SmLINC04237-IBu 0.95 5.19e-08 6.54e-06
Smp_124750.1 SmLINC04627-IBu 0.91 1.61e-06 7.20e-05
Smp_124750.1 SmLINC04896-IBu 0.83 1.00e-04 1.50e-03
Smp_124750.1 SmLINC05404-IBu 0.89 5.90e-06 1.00e-04
Smp_124750.1 SmLINC05684-IBu 0.96 3.76e-09 1.11e-06
Smp_124750.1 SmLINC06239-IBu 0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_124750.1 0 -0.94 -0.07 1.14 6.20
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_124750.1 0.91 1.76e-06 7.95e-05
Smp_124750.1 Smp_007950.1 0.93 4.96e-07 3.26e-05
Smp_124750.1 Smp_037720.1 0.92 5.31e-07 3.42e-05
Smp_041540.1 Smp_124750.1 0.97 5.38e-10 3.42e-07
Smp_124750.1 Smp_070540.1 0.98 4.90e-12 1.77e-08
Smp_124750.1 Smp_105450.1 0.99 4.92e-13 4.26e-09
Smp_124750.1 Smp_105450.2 0.97 1.47e-09 6.53e-07
Smp_124750.1 Smp_123880.1 0.91 1.75e-06 7.94e-05
Smp_126340.1 Smp_124750.1 0.99 1.21e-17 3.88e-12
Smp_124750.1 Smp_131410.1 0.91 1.36e-06 6.63e-05
Smp_124750.1 Smp_136730.1 0.97 6.32e-10 3.79e-07
Smp_137460.1 Smp_124750.1 0.92 1.02e-06 5.43e-05
Smp_124750.1 Smp_137700.1 0.93 3.86e-07 2.74e-05
Smp_124750.1 Smp_137720.1 0.90 2.92e-06 1.00e-04
Smp_124750.1 Smp_138360.1 0.91 1.53e-06 7.21e-05
Smp_139160.1 Smp_124750.1 0.95 3.32e-08 5.11e-06
Smp_124750.1 Smp_139240.1 0.94 8.09e-08 9.37e-06
Smp_152150.1 Smp_124750.1 0.91 1.95e-06 8.55e-05
Smp_162320.1 Smp_124750.1 0.92 1.17e-06 5.97e-05
Smp_124750.1 Smp_163700.1 0.91 1.44e-06 6.90e-05
Smp_124750.1 Smp_164320.1 0.90 4.82e-06 1.00e-04
Smp_164400.1 Smp_124750.1 0.94 8.22e-08 9.46e-06
Smp_181070.1 Smp_124750.1 0.94 6.26e-08 7.86e-06
Smp_124750.1 Smp_187140.1 0.94 1.76e-07 1.59e-05
Smp_194380.1 Smp_124750.1 0.93 3.92e-07 2.77e-05
Smp_124750.1 Smp_194910.1 0.94 8.12e-08 9.38e-06
Smp_124750.1 Smp_196830.1 0.90 2.86e-06 1.00e-04
Smp_124750.1 Smp_205580.1 0.93 2.59e-07 2.08e-05