Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_124590.1 Data

Correlation between Smp_124590.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_124590.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_124590.1 0 0.36 3.82 6.24 6.11

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_124590.1 SmLINC00171-IBu 0.91 1.63e-06 7.26e-05
Smp_124590.1 SmLINC00369-IBu 0.93 2.61e-07 1.99e-05
Smp_124590.1 SmLINC00376-IBu 0.80 2.00e-04 2.90e-03
Smp_124590.1 SmLINC00477-IBu 0.93 3.13e-07 2.27e-05
Smp_124590.1 SmLINC00484-IBu 0.89 5.91e-06 1.00e-04
Smp_124590.1 SmLINC00525-IBu 0.81 2.00e-04 2.60e-03
Smp_124590.1 SmLINC00548-IBu 0.93 2.34e-07 1.85e-05
Smp_124590.1 SmLINC00633-IBu 0.92 7.46e-07 4.17e-05
Smp_124590.1 SmLINC00769-IBu 0.84 6.62e-05 1.00e-03
Smp_124590.1 SmLINC01066-IBu 0.92 5.78e-07 3.48e-05
Smp_124590.1 SmLINC01084-IBu 0.87 2.35e-05 4.00e-04
Smp_124590.1 SmLINC01122-IBu 0.89 7.82e-06 2.00e-04
Smp_124590.1 SmLINC01139-IBu 0.92 8.38e-07 4.52e-05
Smp_124590.1 SmLINC01171-IBu 0.81 2.00e-04 2.70e-03
Smp_124590.1 SmLINC01231-IBu 0.84 7.47e-05 1.10e-03
Smp_124590.1 SmLINC01431-IBu 0.93 2.51e-07 1.94e-05
Smp_124590.1 SmLINC01433-IBu 0.92 8.06e-07 4.40e-05
Smp_124590.1 SmLINC01435-IBu 0.92 9.82e-07 5.06e-05
Smp_124590.1 SmLINC01538-IBu 0.95 3.27e-08 4.78e-06
Smp_124590.1 SmLINC01569-IBu 0.90 4.41e-06 1.00e-04
Smp_124590.1 SmLINC01733-IBu 0.93 2.03e-07 1.67e-05
Smp_124590.1 SmLINC01746-IBu 0.96 4.54e-09 1.26e-06
Smp_124590.1 SmLINC01822-IBu 0.89 5.22e-06 1.00e-04
Smp_124590.1 SmLINC02084-IBu 0.92 7.02e-07 3.99e-05
Smp_124590.1 SmLINC02255-IBu -0.80 2.00e-04 2.80e-03
Smp_124590.1 SmLINC02546-IBu 0.92 1.01e-06 5.18e-05
Smp_124590.1 SmLINC02657-IBu -0.80 3.00e-04 3.20e-03
Smp_124590.1 SmLINC03108-IBu 0.88 1.37e-05 3.00e-04
Smp_124590.1 SmLINC03309-IBu 0.96 7.84e-09 1.81e-06
Smp_124590.1 SmLINC03542-IBu 0.91 2.31e-06 9.31e-05
Smp_124590.1 SmLINC03693-IBu 0.95 1.66e-08 3.01e-06
Smp_124590.1 SmLINC03849-IBu -0.81 2.00e-04 2.60e-03
Smp_124590.1 SmLINC03927-IBu 0.83 1.00e-04 1.40e-03
Smp_124590.1 SmLINC04054-IBu 0.87 1.71e-05 3.00e-04
Smp_124590.1 SmLINC04345-IBu 0.86 3.33e-05 6.00e-04
Smp_124590.1 SmLINC04421-IBu 0.81 2.00e-04 2.40e-03
Smp_124590.1 SmLINC04432-IBu 0.91 2.14e-06 8.83e-05
Smp_124590.1 SmLINC04475-IBu 0.93 2.92e-07 2.16e-05
Smp_124590.1 SmLINC04478-IBu 0.86 3.56e-05 6.00e-04
Smp_124590.1 SmLINC04521-IBu 0.92 1.01e-06 5.19e-05
Smp_124590.1 SmLINC04637-IBu 0.81 2.00e-04 2.40e-03
Smp_124590.1 SmLINC04663-IBu 0.91 1.49e-06 6.82e-05
Smp_124590.1 SmLINC04684-IBu 0.92 5.57e-07 3.39e-05
Smp_124590.1 SmLINC04747-IBu 0.83 9.67e-05 1.30e-03
Smp_124590.1 SmLINC04769-IBu 0.87 2.04e-05 4.00e-04
Smp_124590.1 SmLINC05009-IBu 0.86 3.71e-05 6.00e-04
Smp_124590.1 SmLINC05147-IBu 0.96 1.28e-08 2.52e-06
Smp_124590.1 SmLINC05171-IBu 0.90 3.34e-06 1.00e-04
Smp_124590.1 SmLINC05258-IBu 0.94 6.31e-08 7.48e-06
Smp_124590.1 SmLINC06007-IBu 0.87 2.02e-05 4.00e-04
Smp_124590.1 SmLINC06010-IBu 0.87 2.10e-05 4.00e-04
Smp_124590.1 SmLINC06024-IBu 0.81 2.00e-04 2.50e-03
Smp_124590.1 SmLINC06145-IBu 0.82 1.00e-04 1.70e-03
Smp_124590.1 SmLINC06205-IBu 0.84 8.27e-05 1.20e-03
Smp_124590.1 SmLINC06221-IBu 0.97 2.07e-09 7.55e-07
Smp_124590.1 SmLINC06418-IBu 0.92 7.57e-07 4.21e-05
Smp_124590.1 SmLINC06444-IBu 0.90 4.68e-06 1.00e-04
Smp_124590.1 SmLINC06449-IBu 0.95 3.63e-08 5.12e-06
Smp_124590.1 SmLINC06536-IBu 0.93 4.95e-07 3.12e-05
Smp_124590.1 SmLINC06538-IBu 0.82 1.00e-04 1.70e-03
Smp_124590.1 SmLINC06543-IBu 0.95 2.18e-08 3.62e-06

Correlation between Smp_124590.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_124590.1 0 0.36 3.82 6.24 6.11
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 Smp_124590.1 0.92 8.51e-07 4.76e-05
Smp_020760.2 Smp_124590.1 0.91 2.00e-06 8.72e-05
Smp_031040.1 Smp_124590.1 0.91 1.27e-06 6.35e-05
Smp_034980.2 Smp_124590.1 0.92 7.86e-07 4.50e-05
Smp_040970.2 Smp_124590.1 0.91 1.64e-06 7.56e-05
Smp_045200.1 Smp_124590.1 0.97 3.10e-10 2.41e-07
Smp_051210.3 Smp_124590.1 0.94 7.50e-08 8.89e-06
Smp_055340.2 Smp_124590.1 0.91 1.56e-06 7.32e-05
Smp_058660.1 Smp_124590.1 0.97 2.09e-09 8.20e-07
Smp_068270.1 Smp_124590.1 0.92 6.96e-07 4.13e-05
Smp_124590.1 Smp_079420.1 0.90 2.62e-06 1.00e-04
Smp_082580.1 Smp_124590.1 0.93 2.50e-07 2.03e-05
Smp_084270.1 Smp_124590.1 0.92 8.52e-07 4.77e-05
Smp_118560.1 Smp_124590.1 0.92 7.69e-07 4.43e-05
Smp_123200.1 Smp_124590.1 0.93 3.22e-07 2.42e-05
Smp_125210.1 Smp_124590.1 0.93 2.70e-07 2.14e-05
Smp_134960.1 Smp_124590.1 0.94 8.61e-08 9.77e-06
Smp_137320.1 Smp_124590.1 0.97 4.56e-10 3.08e-07
Smp_141680.1 Smp_124590.1 0.96 7.06e-09 1.81e-06
Smp_145400.1 Smp_124590.1 0.96 9.92e-09 2.27e-06
Smp_150980.2 Smp_124590.1 0.94 1.40e-07 1.36e-05
Smp_151120.1 Smp_124590.1 0.94 6.95e-08 8.44e-06
Smp_154190.1 Smp_124590.1 0.91 2.16e-06 9.18e-05
Smp_159070.2 Smp_124590.1 0.91 2.08e-06 8.95e-05
Smp_164550.1 Smp_124590.1 0.93 4.80e-07 3.19e-05
Smp_170280.1 Smp_124590.1 0.96 1.34e-08 2.78e-06
Smp_172480.1 Smp_124590.1 0.97 9.76e-10 5.01e-07
Smp_172960.1 Smp_124590.1 0.94 1.57e-07 1.47e-05
Smp_175020.1 Smp_124590.1 0.90 4.10e-06 1.00e-04
Smp_194860.1 Smp_124590.1 0.92 5.26e-07 3.40e-05
Smp_194960.1 Smp_124590.1 0.93 3.07e-07 2.34e-05
Smp_194970.1 Smp_124590.1 0.92 1.19e-06 6.04e-05
Smp_194980.1 Smp_124590.1 0.90 4.06e-06 1.00e-04
Smp_200750.1 Smp_124590.1 0.93 2.84e-07 2.22e-05
Smp_203090.1 Smp_124590.1 0.92 1.13e-06 5.83e-05
Smp_205270.1 Smp_124590.1 0.97 2.28e-09 8.68e-07