Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_124070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_124070.1 0 -2.80 -6.15 -2.00 0.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_124070.1 SmLINC01520-IBu 0.85 4.65e-05 8.00e-04
Smp_124070.1 SmLINC02029-IBu 0.86 3.33e-05 6.00e-04
Smp_124070.1 SmLINC02539-IBu 0.81 2.00e-04 2.40e-03
Smp_124070.1 SmLINC02577-IBu 0.84 7.64e-05 1.10e-03
Smp_124070.1 SmLINC02783-IBu 0.85 4.09e-05 7.00e-04
Smp_124070.1 SmLINC02786-IBu 0.90 2.90e-06 1.00e-04
Smp_124070.1 SmLINC04235-IBu 0.82 1.00e-04 1.80e-03
Smp_124070.1 SmLINC04237-IBu 0.84 6.67e-05 1.00e-03
Smp_124070.1 SmLINC04627-IBu 0.83 1.00e-04 1.50e-03
Smp_124070.1 SmLINC04896-IBu 0.81 1.00e-04 2.20e-03
Smp_124070.1 SmLINC05404-IBu 0.86 3.89e-05 7.00e-04
Smp_124070.1 SmLINC05684-IBu 0.87 1.83e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_124070.1 0 -2.80 -6.15 -2.00 0.99
Smp_126340.1 0 0.00 2.97 7.05 12.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 Smp_124070.1 0.9 3.51e-06 1.00e-04
Smp_124070.1 Smp_070540.1 0.9 4.16e-06 1.00e-04
Smp_126340.1 Smp_124070.1 0.9 3.12e-06 1.00e-04