Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_123540.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_123540.1 0 0.34 -4.05 7.34 7.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123540.1 SmLINC00001-IBu 0.86 3.69e-05 6.00e-04
Smp_123540.1 SmLINC00004-IBu 0.85 4.86e-05 8.00e-04
Smp_123540.1 SmLINC00266-IBu 0.86 3.48e-05 6.00e-04
Smp_123540.1 SmLINC00369-IBu 0.94 1.32e-07 1.24e-05
Smp_123540.1 SmLINC00376-IBu 0.80 2.00e-04 2.90e-03
Smp_123540.1 SmLINC00525-IBu 0.89 5.32e-06 1.00e-04
Smp_123540.1 SmLINC00633-IBu 0.87 2.10e-05 4.00e-04
Smp_123540.1 SmLINC01084-IBu 0.91 1.37e-06 6.43e-05
Smp_123540.1 SmLINC01122-IBu 0.88 1.25e-05 3.00e-04
Smp_123540.1 SmLINC01431-IBu 0.89 6.02e-06 1.00e-04
Smp_123540.1 SmLINC01432-IBu 0.91 2.17e-06 8.91e-05
Smp_123540.1 SmLINC01435-IBu 0.85 4.74e-05 8.00e-04
Smp_123540.1 SmLINC01520-IBu 0.81 2.00e-04 2.40e-03
Smp_123540.1 SmLINC01569-IBu 0.87 2.15e-05 4.00e-04
Smp_123540.1 SmLINC02084-IBu 0.93 5.14e-07 3.20e-05
Smp_123540.1 SmLINC02394-IBu 0.87 1.98e-05 4.00e-04
Smp_123540.1 SmLINC02539-IBu 0.85 5.37e-05 8.00e-04
Smp_123540.1 SmLINC02540-IBu 0.83 9.40e-05 1.30e-03
Smp_123540.1 SmLINC02545-IBu 0.82 1.00e-04 2.10e-03
Smp_123540.1 SmLINC02546-IBu 0.80 2.00e-04 2.90e-03
Smp_123540.1 SmLINC02577-IBu 0.80 3.00e-04 3.20e-03
Smp_123540.1 SmLINC03108-IBu 0.86 2.66e-05 5.00e-04
Smp_123540.1 SmLINC03693-IBu 0.83 1.00e-04 1.60e-03
Smp_123540.1 SmLINC03849-IBu -0.81 2.00e-04 2.40e-03
Smp_123540.1 SmLINC03927-IBu 0.89 5.39e-06 1.00e-04
Smp_123540.1 SmLINC04421-IBu 0.95 2.20e-08 3.64e-06
Smp_123540.1 SmLINC04423-IBu 0.80 2.00e-04 2.80e-03
Smp_123540.1 SmLINC04478-IBu 0.86 2.92e-05 5.00e-04
Smp_123540.1 SmLINC04521-IBu 0.89 7.31e-06 2.00e-04
Smp_123540.1 SmLINC05147-IBu 0.85 4.16e-05 7.00e-04
Smp_123540.1 SmLINC05258-IBu 0.81 2.00e-04 2.30e-03
Smp_123540.1 SmLINC05274-IBu -0.80 3.00e-04 3.20e-03
Smp_123540.1 SmLINC05289-IBu 0.93 2.68e-07 2.03e-05
Smp_123540.1 SmLINC05604-IBu 0.92 8.91e-07 4.73e-05
Smp_123540.1 SmLINC06024-IBu 0.87 1.75e-05 3.00e-04
Smp_123540.1 SmLINC06145-IBu 0.90 4.28e-06 1.00e-04
Smp_123540.1 SmLINC06221-IBu 0.80 2.00e-04 2.90e-03
Smp_123540.1 SmLINC06490-IBu -0.82 1.00e-04 1.80e-03
Smp_123540.1 SmLINC06543-IBu 0.85 4.89e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_123540.1 0 0.34 -4.05 7.34 7.97
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_123540.1 0.93 2.54e-07 2.05e-05
Smp_038870.2 Smp_123540.1 0.91 2.34e-06 9.74e-05
Smp_050350.3 Smp_123540.1 0.90 2.86e-06 1.00e-04
Smp_123540.1 Smp_056460.1 0.95 3.21e-08 5.00e-06
Smp_123540.1 Smp_079420.1 0.92 1.12e-06 5.80e-05
Smp_123540.1 Smp_123550.1 0.95 3.17e-08 4.96e-06
Smp_123540.1 Smp_137000.2 0.90 3.91e-06 1.00e-04
Smp_123540.1 Smp_145400.1 0.90 3.83e-06 1.00e-04
Smp_123540.1 Smp_151120.1 0.92 7.64e-07 4.41e-05
Smp_123540.1 Smp_156930.1 0.95 2.74e-08 4.49e-06
Smp_166860.1 Smp_123540.1 0.93 4.94e-07 3.26e-05
Smp_123540.1 Smp_172960.1 0.94 1.27e-07 1.27e-05
Smp_194860.1 Smp_123540.1 0.96 1.28e-08 2.70e-06
Smp_203090.1 Smp_123540.1 0.92 6.88e-07 4.10e-05