Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_123240.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_123240.1 0 -2.26 -1.40 1.18 2.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123240.1 SmLINC00001-IBu 0.93 2.01e-07 1.66e-05
Smp_123240.1 SmLINC00004-IBu 0.94 8.82e-08 9.41e-06
Smp_123240.1 SmLINC00294-IBu -0.81 2.00e-04 2.70e-03
Smp_123240.1 SmLINC00525-IBu 0.84 6.58e-05 1.00e-03
Smp_123240.1 SmLINC01084-IBu 0.86 3.18e-05 6.00e-04
Smp_123240.1 SmLINC01431-IBu 0.85 5.64e-05 9.00e-04
Smp_123240.1 SmLINC01520-IBu 0.82 1.00e-04 2.00e-03
Smp_123240.1 SmLINC02029-IBu 0.84 8.16e-05 1.20e-03
Smp_123240.1 SmLINC02376-IBu 0.87 2.04e-05 4.00e-04
Smp_123240.1 SmLINC02394-IBu 0.89 8.12e-06 2.00e-04
Smp_123240.1 SmLINC02539-IBu 0.86 3.00e-05 5.00e-04
Smp_123240.1 SmLINC02577-IBu 0.84 7.36e-05 1.10e-03
Smp_123240.1 SmLINC02783-IBu 0.80 3.00e-04 3.30e-03
Smp_123240.1 SmLINC03326-IBu 0.84 6.41e-05 1.00e-03
Smp_123240.1 SmLINC04235-IBu 0.91 1.80e-06 7.81e-05
Smp_123240.1 SmLINC04421-IBu 0.88 1.48e-05 3.00e-04
Smp_123240.1 SmLINC04423-IBu 0.91 1.51e-06 6.89e-05
Smp_123240.1 SmLINC04478-IBu 0.80 3.00e-04 3.20e-03
Smp_123240.1 SmLINC04627-IBu 0.83 1.00e-04 1.50e-03
Smp_123240.1 SmLINC05274-IBu -0.81 2.00e-04 2.50e-03
Smp_123240.1 SmLINC05289-IBu 0.89 5.70e-06 1.00e-04
Smp_123240.1 SmLINC05604-IBu 0.90 4.40e-06 1.00e-04
Smp_123240.1 SmLINC05684-IBu 0.82 1.00e-04 1.80e-03
Smp_123240.1 SmLINC06024-IBu 0.92 1.12e-06 5.57e-05
Smp_123240.1 SmLINC06145-IBu 0.81 2.00e-04 2.40e-03
Smp_123240.1 SmLINC06239-IBu 0.86 2.76e-05 5.00e-04
Smp_123240.1 SmLINC06490-IBu -0.84 6.95e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123240.1 0 -2.26 -1.40 1.18 2.57
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_123240.1 0.91 1.36e-06 6.65e-05
Smp_123240.1 Smp_016490.2 0.91 1.44e-06 6.92e-05
Smp_123240.1 Smp_024180.1 0.96 9.40e-09 2.19e-06
Smp_024180.2 Smp_123240.1 0.96 8.73e-09 2.08e-06
Smp_123240.1 Smp_028870.1 0.92 8.75e-07 4.85e-05
Smp_033260.1 Smp_123240.1 0.92 7.49e-07 4.35e-05
Smp_038870.2 Smp_123240.1 0.91 1.47e-06 7.03e-05
Smp_050350.3 Smp_123240.1 0.93 3.34e-07 2.48e-05
Smp_123240.1 Smp_052280.2 0.90 4.24e-06 1.00e-04
Smp_123240.1 Smp_094050.1 0.93 1.96e-07 1.71e-05
Smp_123240.1 Smp_102780.1 0.91 2.18e-06 9.24e-05
Smp_123240.1 Smp_130100.1 0.91 2.36e-06 9.78e-05
Smp_123240.1 Smp_131490.1 0.92 6.90e-07 4.11e-05
Smp_123240.1 Smp_140720.1 0.90 3.62e-06 1.00e-04
Smp_123240.1 Smp_155570.1 0.92 9.06e-07 4.97e-05
Smp_159650.1 Smp_123240.1 0.92 7.31e-07 4.28e-05
Smp_123240.1 Smp_192780.1 0.90 4.24e-06 1.00e-04
Smp_123240.1 Smp_201910.1 0.92 7.96e-07 4.54e-05
Smp_123240.1 Smp_202610.1 0.92 9.86e-07 5.28e-05
Smp_123240.1 Smp_203030.1 0.92 7.28e-07 4.27e-05