Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_123220.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_123220.1 0 0.00 1.43 6.66 7.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123220.1 SmLINC00004-IBu 0.86 2.96e-05 5.00e-04
Smp_123220.1 SmLINC00369-IBu 0.87 2.21e-05 4.00e-04
Smp_123220.1 SmLINC00376-IBu 0.80 2.00e-04 2.90e-03
Smp_123220.1 SmLINC00525-IBu 0.92 1.04e-06 5.28e-05
Smp_123220.1 SmLINC00548-IBu 0.90 3.37e-06 1.00e-04
Smp_123220.1 SmLINC00633-IBu 0.89 5.42e-06 1.00e-04
Smp_123220.1 SmLINC01084-IBu 0.93 2.61e-07 2.00e-05
Smp_123220.1 SmLINC01122-IBu 0.95 4.36e-08 5.81e-06
Smp_123220.1 SmLINC01139-IBu 0.85 3.93e-05 7.00e-04
Smp_123220.1 SmLINC01171-IBu 0.85 5.87e-05 9.00e-04
Smp_123220.1 SmLINC01431-IBu 0.93 4.20e-07 2.78e-05
Smp_123220.1 SmLINC01432-IBu 0.81 1.00e-04 2.20e-03
Smp_123220.1 SmLINC01435-IBu 0.84 8.48e-05 1.20e-03
Smp_123220.1 SmLINC01538-IBu 0.90 2.52e-06 9.90e-05
Smp_123220.1 SmLINC01569-IBu 0.95 4.61e-08 6.04e-06
Smp_123220.1 SmLINC01733-IBu 0.91 2.05e-06 8.54e-05
Smp_123220.1 SmLINC01746-IBu 0.84 6.88e-05 1.00e-03
Smp_123220.1 SmLINC02084-IBu 0.86 3.58e-05 6.00e-04
Smp_123220.1 SmLINC02545-IBu 0.84 6.49e-05 1.00e-03
Smp_123220.1 SmLINC02546-IBu 0.88 1.49e-05 3.00e-04
Smp_123220.1 SmLINC03309-IBu 0.87 1.92e-05 4.00e-04
Smp_123220.1 SmLINC03693-IBu 0.81 2.00e-04 2.60e-03
Smp_123220.1 SmLINC03927-IBu 0.89 5.42e-06 1.00e-04
Smp_123220.1 SmLINC04421-IBu 0.88 1.39e-05 3.00e-04
Smp_123220.1 SmLINC04423-IBu 0.90 4.51e-06 1.00e-04
Smp_123220.1 SmLINC04432-IBu 0.86 3.46e-05 6.00e-04
Smp_123220.1 SmLINC04478-IBu 0.95 2.41e-08 3.87e-06
Smp_123220.1 SmLINC04521-IBu 0.89 6.25e-06 1.00e-04
Smp_123220.1 SmLINC04637-IBu 0.81 2.00e-04 2.40e-03
Smp_123220.1 SmLINC04663-IBu 0.81 2.00e-04 2.40e-03
Smp_123220.1 SmLINC04684-IBu 0.80 2.00e-04 2.80e-03
Smp_123220.1 SmLINC05147-IBu 0.84 8.17e-05 1.20e-03
Smp_123220.1 SmLINC05289-IBu 0.81 2.00e-04 2.30e-03
Smp_123220.1 SmLINC05604-IBu 0.84 8.83e-05 1.20e-03
Smp_123220.1 SmLINC06010-IBu 0.83 1.00e-04 1.60e-03
Smp_123220.1 SmLINC06024-IBu 0.93 3.39e-07 2.40e-05
Smp_123220.1 SmLINC06415-IBu 0.82 1.00e-04 1.90e-03
Smp_123220.1 SmLINC06444-IBu 0.88 1.38e-05 3.00e-04
Smp_123220.1 SmLINC06543-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_123220.1 0 0.00 1.43 6.66 7.13
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 Smp_123220.1 0.94 1.55e-07 1.46e-05
Smp_033260.1 Smp_123220.1 0.92 8.46e-07 4.74e-05
Smp_034980.2 Smp_123220.1 0.91 1.47e-06 7.00e-05
Smp_123220.1 Smp_040970.2 0.96 5.42e-09 1.52e-06
Smp_050350.3 Smp_123220.1 0.92 7.85e-07 4.50e-05
Smp_123220.1 Smp_052280.2 0.91 1.31e-06 6.47e-05
Smp_056460.1 Smp_123220.1 0.92 8.66e-07 4.82e-05
Smp_123220.1 Smp_079420.1 0.94 1.54e-07 1.45e-05
Smp_090140.1 Smp_123220.1 0.92 1.17e-06 5.98e-05
Smp_094050.1 Smp_123220.1 0.95 2.63e-08 4.36e-06
Smp_095410.1 Smp_123220.1 0.91 1.31e-06 6.48e-05
Smp_123220.1 Smp_137000.2 0.93 3.70e-07 2.67e-05
Smp_123220.1 Smp_145400.1 0.90 3.29e-06 1.00e-04
Smp_150980.2 Smp_123220.1 0.90 3.55e-06 1.00e-04
Smp_172480.1 Smp_123220.1 0.90 2.55e-06 1.00e-04
Smp_123220.1 Smp_172960.1 0.91 2.27e-06 9.51e-05
Smp_194860.1 Smp_123220.1 0.91 2.15e-06 9.17e-05
Smp_203090.1 Smp_123220.1 0.93 2.50e-07 2.03e-05