Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_123000.2 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
Smp_123000.2 0 1.85 1.78 -1.88 -2.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123000.2 SmLINC01979-IBu 0.91 1.55e-06 5.01e-05
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_123000.2 0 1.85 1.78 -1.88 -2.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123000.2 SmLINC01316-IBu 0.84 8.64e-05 1.20e-03
Smp_123000.2 SmLINC01429-IBu 0.85 5.79e-05 9.00e-04
Smp_123000.2 SmLINC01979-IBu 0.91 1.55e-06 7.03e-05
Smp_123000.2 SmLINC02646-IBu 0.88 1.10e-05 2.00e-04
Smp_123000.2 SmLINC03111-IBu 0.86 2.68e-05 5.00e-04
Smp_123000.2 SmLINC04074-IBu 0.89 5.54e-06 1.00e-04
Smp_123000.2 SmLINC06646-IBu 0.97 2.03e-10 1.68e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_123000.2 0 1.85 1.78 -1.88 -2.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123000.2 Smp_017650.1 0.92 8.88e-07 4.91e-05
Smp_123000.2 Smp_024140.1 0.92 1.00e-06 5.36e-05
Smp_123000.2 Smp_059340.3 0.94 7.58e-08 8.96e-06
Smp_059530.1 Smp_123000.2 0.92 8.63e-07 4.81e-05
Smp_123000.2 Smp_083380.2 0.92 6.12e-07 3.78e-05