Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_123000.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123000.1 SmLINC00037-IBu 0.80 3.00e-04 3.30e-03
Smp_123000.1 SmLINC00133-IBu 0.84 7.05e-05 1.00e-03
Smp_123000.1 SmLINC01486-IBu 0.81 1.00e-04 2.20e-03
Smp_123000.1 SmLINC02038-IBu 0.86 3.20e-05 6.00e-04
Smp_123000.1 SmLINC03362-IBu 0.80 3.00e-04 3.30e-03
Smp_123000.1 SmLINC03769-IBu 0.82 1.00e-04 1.90e-03
Smp_123000.1 SmLINC03930-IBu 0.80 2.00e-04 3.10e-03
Smp_123000.1 SmLINC04075-IBu 0.87 2.32e-05 4.00e-04
Smp_123000.1 SmLINC04940-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01834-IBu 0 0.05 -2.77 -8.44 -8.44
SmLINC02609-IBu 0 0.63 -2.31 -10.45 -10.45
SmLINC03228-IBu 0 1.09 -2.89 -4.45 -6.58
SmLINC06087-IBu 0 0.85 -2.76 -2.63 -5.11
SmLINC06117-IBu 0 0.50 -1.42 -6.03 -9.04
SmLINC06717-IBu 0 0.99 -8.80 -8.80 -8.80
Smp_004530.1 0 -0.23 -3.64 -5.83 -5.83
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_030010.1 0 0.62 -6.53 -3.86 -5.21
Smp_090930.2 0 -0.51 -10.22 -10.22 -10.22
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_129930.1 0 7.26 0.00 0.00 0.00
Smp_136240.3 0 0.29 -2.67 -3.72 -4.15
Smp_201410.1 0 0.26 -6.26 -6.26 -6.26
Smp_202590.1 0 0.93 -0.68 -5.97 -3.65
Smp_204090.1 0 0.38 0.16 -4.38 -6.42
Smp_205480.1 0 0.40 -2.39 -9.52 -9.52
Smp_205780.1 0 1.12 -3.78 -8.26 -8.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123000.1 SmLINC01834-IBu 0.91 2.19e-06 9.28e-05
Smp_123000.1 SmLINC02609-IBu 0.92 7.50e-07 4.36e-05
Smp_123000.1 SmLINC03228-IBu 0.92 1.03e-06 5.45e-05
Smp_123000.1 SmLINC06087-IBu 0.90 4.14e-06 1.00e-04
Smp_123000.1 SmLINC06117-IBu 0.92 5.66e-07 3.58e-05
Smp_123000.1 SmLINC06717-IBu 0.90 2.99e-06 1.00e-04
Smp_004530.1 Smp_123000.1 0.94 9.72e-08 1.06e-05
Smp_009320.1 Smp_123000.1 0.92 7.10e-07 4.19e-05
Smp_030010.1 Smp_123000.1 0.92 7.04e-07 4.17e-05
Smp_090930.2 Smp_123000.1 0.93 2.46e-07 2.01e-05
Smp_129930.1 Smp_123000.1 0.90 4.69e-06 1.00e-04
Smp_136240.3 Smp_123000.1 0.95 5.80e-08 7.47e-06
Smp_201410.1 Smp_123000.1 0.91 1.96e-06 8.57e-05
Smp_123000.1 Smp_202590.1 0.96 2.43e-09 9.03e-07
Smp_204090.1 Smp_123000.1 0.93 3.16e-07 2.39e-05
Smp_205480.1 Smp_123000.1 0.91 1.50e-06 7.11e-05
Smp_205780.1 Smp_123000.1 0.92 1.01e-06 5.38e-05