Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_122850.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_122850.1 0 -1.78 -0.11 4.80 4.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_122850.1 SmLINC00369-IBu 0.82 1.00e-04 1.70e-03
Smp_122850.1 SmLINC00477-IBu 0.84 6.67e-05 1.00e-03
Smp_122850.1 SmLINC00484-IBu 0.87 2.18e-05 4.00e-04
Smp_122850.1 SmLINC00548-IBu 0.93 3.99e-07 2.68e-05
Smp_122850.1 SmLINC00633-IBu 0.88 1.24e-05 3.00e-04
Smp_122850.1 SmLINC00769-IBu 0.93 3.23e-07 2.31e-05
Smp_122850.1 SmLINC01084-IBu 0.83 1.00e-04 1.40e-03
Smp_122850.1 SmLINC01122-IBu 0.93 3.35e-07 2.38e-05
Smp_122850.1 SmLINC01139-IBu 0.94 1.54e-07 1.38e-05
Smp_122850.1 SmLINC01171-IBu 0.85 4.48e-05 7.00e-04
Smp_122850.1 SmLINC01231-IBu 0.85 3.95e-05 7.00e-04
Smp_122850.1 SmLINC01431-IBu 0.86 2.61e-05 5.00e-04
Smp_122850.1 SmLINC01435-IBu 0.87 2.23e-05 4.00e-04
Smp_122850.1 SmLINC01538-IBu 0.96 1.35e-08 2.62e-06
Smp_122850.1 SmLINC01569-IBu 0.94 1.33e-07 1.25e-05
Smp_122850.1 SmLINC01733-IBu 0.95 3.26e-08 4.76e-06
Smp_122850.1 SmLINC01746-IBu 0.91 2.38e-06 9.52e-05
Smp_122850.1 SmLINC02546-IBu 0.84 7.15e-05 1.10e-03
Smp_122850.1 SmLINC03309-IBu 0.93 2.62e-07 2.00e-05
Smp_122850.1 SmLINC03542-IBu 0.83 1.00e-04 1.60e-03
Smp_122850.1 SmLINC03693-IBu 0.85 5.20e-05 8.00e-04
Smp_122850.1 SmLINC04054-IBu 0.86 3.57e-05 6.00e-04
Smp_122850.1 SmLINC04345-IBu 0.91 1.86e-06 7.99e-05
Smp_122850.1 SmLINC04432-IBu 0.92 7.04e-07 4.00e-05
Smp_122850.1 SmLINC04475-IBu 0.88 1.12e-05 2.00e-04
Smp_122850.1 SmLINC04478-IBu 0.91 1.73e-06 7.60e-05
Smp_122850.1 SmLINC04521-IBu 0.88 9.89e-06 2.00e-04
Smp_122850.1 SmLINC04637-IBu 0.95 1.56e-08 2.88e-06
Smp_122850.1 SmLINC04663-IBu 0.93 4.13e-07 2.75e-05
Smp_122850.1 SmLINC04684-IBu 0.82 1.00e-04 1.90e-03
Smp_122850.1 SmLINC04747-IBu 0.87 1.61e-05 3.00e-04
Smp_122850.1 SmLINC04953-IBu 0.85 5.55e-05 9.00e-04
Smp_122850.1 SmLINC05147-IBu 0.84 8.50e-05 1.20e-03
Smp_122850.1 SmLINC05171-IBu 0.83 1.00e-04 1.50e-03
Smp_122850.1 SmLINC05258-IBu 0.82 1.00e-04 1.70e-03
Smp_122850.1 SmLINC06010-IBu 0.95 5.64e-08 6.93e-06
Smp_122850.1 SmLINC06024-IBu 0.81 2.00e-04 2.70e-03
Smp_122850.1 SmLINC06221-IBu 0.84 6.46e-05 1.00e-03
Smp_122850.1 SmLINC06418-IBu 0.81 2.00e-04 2.60e-03
Smp_122850.1 SmLINC06444-IBu 0.96 3.55e-09 1.07e-06
Smp_122850.1 SmLINC06449-IBu 0.89 6.53e-06 1.00e-04
Smp_122850.1 SmLINC06536-IBu 0.82 1.00e-04 1.80e-03
Smp_122850.1 SmLINC06537-IBu 0.92 6.99e-07 3.98e-05
Smp_122850.1 SmLINC06543-IBu 0.84 8.86e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_122850.1 0 -1.78 -0.11 4.80 4.04
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 Smp_122850.1 0.92 7.27e-07 4.26e-05
Smp_034980.2 Smp_122850.1 0.97 1.31e-09 6.06e-07
Smp_122850.1 Smp_040970.2 0.91 1.62e-06 7.50e-05
Smp_056360.3 Smp_122850.1 0.92 8.62e-07 4.80e-05
Smp_122850.1 Smp_068270.1 0.92 8.75e-07 4.86e-05
Smp_122850.1 Smp_125200.1 0.90 2.58e-06 1.00e-04
Smp_150980.2 Smp_122850.1 0.94 1.13e-07 1.17e-05
Smp_154190.1 Smp_122850.1 0.94 6.84e-08 8.35e-06
Smp_122850.1 Smp_164550.1 0.93 2.15e-07 1.83e-05
Smp_172480.1 Smp_122850.1 0.92 9.63e-07 5.19e-05
Smp_122850.1 Smp_205270.1 0.90 2.53e-06 1.00e-04