Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_122500.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_122500.1 0 0.84 0.19 4.69 6.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_122500.1 SmLINC00001-IBu 0.95 4.03e-08 5.50e-06
Smp_122500.1 SmLINC00004-IBu 0.94 7.51e-08 8.43e-06
Smp_122500.1 SmLINC00525-IBu 0.81 1.00e-04 2.30e-03
Smp_122500.1 SmLINC01084-IBu 0.82 1.00e-04 1.70e-03
Smp_122500.1 SmLINC01431-IBu 0.82 1.00e-04 1.80e-03
Smp_122500.1 SmLINC01520-IBu 0.84 8.23e-05 1.20e-03
Smp_122500.1 SmLINC02029-IBu 0.83 9.77e-05 1.30e-03
Smp_122500.1 SmLINC02255-IBu -0.82 1.00e-04 2.00e-03
Smp_122500.1 SmLINC02376-IBu 0.92 5.58e-07 3.40e-05
Smp_122500.1 SmLINC02394-IBu 0.87 1.97e-05 4.00e-04
Smp_122500.1 SmLINC02539-IBu 0.86 2.97e-05 5.00e-04
Smp_122500.1 SmLINC02540-IBu 0.80 3.00e-04 3.10e-03
Smp_122500.1 SmLINC02577-IBu 0.86 3.12e-05 6.00e-04
Smp_122500.1 SmLINC02630-IBu -0.81 2.00e-04 2.40e-03
Smp_122500.1 SmLINC02783-IBu 0.84 8.62e-05 1.20e-03
Smp_122500.1 SmLINC03326-IBu 0.89 6.04e-06 1.00e-04
Smp_122500.1 SmLINC03658-IBu 0.80 3.00e-04 3.30e-03
Smp_122500.1 SmLINC04235-IBu 0.94 1.08e-07 1.08e-05
Smp_122500.1 SmLINC04421-IBu 0.88 1.41e-05 3.00e-04
Smp_122500.1 SmLINC04423-IBu 0.90 2.72e-06 1.00e-04
Smp_122500.1 SmLINC04627-IBu 0.85 4.45e-05 7.00e-04
Smp_122500.1 SmLINC05289-IBu 0.87 2.36e-05 4.00e-04
Smp_122500.1 SmLINC05404-IBu 0.83 1.00e-04 1.50e-03
Smp_122500.1 SmLINC05604-IBu 0.89 6.90e-06 2.00e-04
Smp_122500.1 SmLINC05684-IBu 0.85 4.78e-05 8.00e-04
Smp_122500.1 SmLINC06024-IBu 0.86 2.72e-05 5.00e-04
Smp_122500.1 SmLINC06239-IBu 0.91 2.16e-06 8.87e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_122500.1 0 0.84 0.19 4.69 6.25
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_122500.1 0.94 1.86e-07 1.65e-05
Smp_016490.2 Smp_122500.1 0.93 2.18e-07 1.84e-05
Smp_024180.1 Smp_122500.1 0.95 3.47e-08 5.28e-06
Smp_024180.2 Smp_122500.1 0.95 3.59e-08 5.40e-06
Smp_028870.1 Smp_122500.1 0.94 1.38e-07 1.35e-05
Smp_033260.1 Smp_122500.1 0.90 3.41e-06 1.00e-04
Smp_050350.3 Smp_122500.1 0.93 2.95e-07 2.27e-05
Smp_052280.2 Smp_122500.1 0.90 4.38e-06 1.00e-04
Smp_085180.1 Smp_122500.1 0.92 1.15e-06 5.90e-05
Smp_094050.1 Smp_122500.1 0.91 1.42e-06 6.83e-05
Smp_102780.1 Smp_122500.1 0.93 3.46e-07 2.55e-05
Smp_130100.1 Smp_122500.1 0.93 2.84e-07 2.22e-05
Smp_131490.1 Smp_122500.1 0.94 9.83e-08 1.06e-05
Smp_137720.1 Smp_122500.1 0.90 4.84e-06 1.00e-04
Smp_137810.1 Smp_122500.1 0.91 1.95e-06 8.56e-05
Smp_140720.1 Smp_122500.1 0.91 1.65e-06 7.61e-05
Smp_155570.1 Smp_122500.1 0.93 3.39e-07 2.51e-05
Smp_159650.1 Smp_122500.1 0.96 8.03e-09 1.97e-06
Smp_162320.1 Smp_122500.1 0.90 2.60e-06 1.00e-04
Smp_164320.1 Smp_122500.1 0.91 2.25e-06 9.45e-05
Smp_201910.1 Smp_122500.1 0.92 1.11e-06 5.76e-05
Smp_202610.1 Smp_122500.1 0.93 2.84e-07 2.21e-05
Smp_203030.1 Smp_122500.1 0.94 8.84e-08 9.94e-06