Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_122280.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_122280.1 0 0.00 0.00 4.72 8.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_122280.1 SmLINC00001-IBu 0.86 2.66e-05 5.00e-04
Smp_122280.1 SmLINC00004-IBu 0.80 2.00e-04 2.70e-03
Smp_122280.1 SmLINC01520-IBu 0.80 2.00e-04 3.00e-03
Smp_122280.1 SmLINC02029-IBu 0.80 3.00e-04 3.10e-03
Smp_122280.1 SmLINC02376-IBu 0.83 1.00e-04 1.60e-03
Smp_122280.1 SmLINC02394-IBu 0.81 2.00e-04 2.40e-03
Smp_122280.1 SmLINC02539-IBu 0.81 2.00e-04 2.50e-03
Smp_122280.1 SmLINC02577-IBu 0.84 7.03e-05 1.00e-03
Smp_122280.1 SmLINC02783-IBu 0.89 7.56e-06 2.00e-04
Smp_122280.1 SmLINC03326-IBu 0.88 9.89e-06 2.00e-04
Smp_122280.1 SmLINC04235-IBu 0.89 7.84e-06 2.00e-04
Smp_122280.1 SmLINC04237-IBu 0.84 6.80e-05 1.00e-03
Smp_122280.1 SmLINC04627-IBu 0.95 1.79e-08 3.16e-06
Smp_122280.1 SmLINC05684-IBu 0.87 1.91e-05 4.00e-04
Smp_122280.1 SmLINC06239-IBu 0.88 1.01e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_122280.1 0.95 2.47e-08 4.19e-06
Smp_122280.1 Smp_000410.1 0.93 4.31e-07 2.96e-05
Smp_122280.1 Smp_000420.1 0.91 1.44e-06 6.91e-05
Smp_122280.1 Smp_004420.3 0.96 3.68e-09 1.18e-06
Smp_122280.1 Smp_028870.1 0.90 3.54e-06 1.00e-04
Smp_122280.1 Smp_033250.1 0.92 8.17e-07 4.63e-05
Smp_122280.1 Smp_077920.1 0.94 7.36e-08 8.78e-06
Smp_122280.1 Smp_085180.1 0.91 1.66e-06 7.63e-05
Smp_122280.1 Smp_130970.1 0.90 4.16e-06 1.00e-04
Smp_122280.1 Smp_131490.1 0.92 7.62e-07 4.40e-05
Smp_122280.1 Smp_137700.1 0.95 4.97e-08 6.72e-06
Smp_122280.1 Smp_137720.1 0.93 2.89e-07 2.24e-05
Smp_122280.1 Smp_138360.1 0.92 6.75e-07 4.05e-05
Smp_122280.1 Smp_139160.1 0.90 2.89e-06 1.00e-04
Smp_122280.1 Smp_144440.1 0.96 4.40e-09 1.33e-06
Smp_122280.1 Smp_155310.1 0.92 5.67e-07 3.58e-05
Smp_122280.1 Smp_155310.2 0.90 3.91e-06 1.00e-04
Smp_122280.1 Smp_159650.1 0.93 3.97e-07 2.80e-05
Smp_122280.1 Smp_162320.1 0.91 1.57e-06 7.35e-05
Smp_175560.1 Smp_122280.1 0.94 8.34e-08 9.56e-06
Smp_122280.1 Smp_191910.1 0.93 2.00e-07 1.74e-05
Smp_122280.1 Smp_205580.1 0.90 2.93e-06 1.00e-04