Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_122230.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_122230.1 0 0.05 1.65 4.51 4.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_122230.1 SmLINC00171-IBu 0.86 3.88e-05 7.00e-04
Smp_122230.1 SmLINC00266-IBu 0.86 2.74e-05 5.00e-04
Smp_122230.1 SmLINC00369-IBu 0.97 1.91e-09 7.16e-07
Smp_122230.1 SmLINC00477-IBu 0.86 3.25e-05 6.00e-04
Smp_122230.1 SmLINC00484-IBu 0.84 6.97e-05 1.00e-03
Smp_122230.1 SmLINC00525-IBu 0.81 2.00e-04 2.30e-03
Smp_122230.1 SmLINC00548-IBu 0.82 1.00e-04 2.10e-03
Smp_122230.1 SmLINC00633-IBu 0.87 1.72e-05 3.00e-04
Smp_122230.1 SmLINC01066-IBu 0.84 7.77e-05 1.10e-03
Smp_122230.1 SmLINC01084-IBu 0.87 2.40e-05 5.00e-04
Smp_122230.1 SmLINC01122-IBu 0.89 6.64e-06 1.00e-04
Smp_122230.1 SmLINC01431-IBu 0.89 8.36e-06 2.00e-04
Smp_122230.1 SmLINC01432-IBu 0.83 1.00e-04 1.50e-03
Smp_122230.1 SmLINC01433-IBu 0.89 6.74e-06 2.00e-04
Smp_122230.1 SmLINC01435-IBu 0.90 3.38e-06 1.00e-04
Smp_122230.1 SmLINC01538-IBu 0.83 9.91e-05 1.40e-03
Smp_122230.1 SmLINC01569-IBu 0.88 1.13e-05 2.00e-04
Smp_122230.1 SmLINC01733-IBu 0.81 2.00e-04 2.70e-03
Smp_122230.1 SmLINC01746-IBu 0.87 2.46e-05 5.00e-04
Smp_122230.1 SmLINC01822-IBu 0.83 9.50e-05 1.30e-03
Smp_122230.1 SmLINC02084-IBu 0.93 3.04e-07 2.22e-05
Smp_122230.1 SmLINC02394-IBu 0.82 1.00e-04 2.10e-03
Smp_122230.1 SmLINC02546-IBu 0.81 1.00e-04 2.20e-03
Smp_122230.1 SmLINC03108-IBu 0.89 5.57e-06 1.00e-04
Smp_122230.1 SmLINC03309-IBu 0.85 4.75e-05 8.00e-04
Smp_122230.1 SmLINC03542-IBu 0.89 8.51e-06 2.00e-04
Smp_122230.1 SmLINC03693-IBu 0.89 5.63e-06 1.00e-04
Smp_122230.1 SmLINC03927-IBu 0.84 6.96e-05 1.00e-03
Smp_122230.1 SmLINC04421-IBu 0.86 2.68e-05 5.00e-04
Smp_122230.1 SmLINC04478-IBu 0.83 9.42e-05 1.30e-03
Smp_122230.1 SmLINC04521-IBu 0.91 1.76e-06 7.69e-05
Smp_122230.1 SmLINC04663-IBu 0.81 1.00e-04 2.30e-03
Smp_122230.1 SmLINC04684-IBu 0.82 1.00e-04 2.10e-03
Smp_122230.1 SmLINC04759-IBu 0.85 4.10e-05 7.00e-04
Smp_122230.1 SmLINC05147-IBu 0.88 1.12e-05 2.00e-04
Smp_122230.1 SmLINC05258-IBu 0.89 6.03e-06 1.00e-04
Smp_122230.1 SmLINC05289-IBu 0.84 6.32e-05 1.00e-03
Smp_122230.1 SmLINC05604-IBu 0.80 3.00e-04 3.30e-03
Smp_122230.1 SmLINC06024-IBu 0.80 3.00e-04 3.30e-03
Smp_122230.1 SmLINC06145-IBu 0.90 4.84e-06 1.00e-04
Smp_122230.1 SmLINC06221-IBu 0.89 5.36e-06 1.00e-04
Smp_122230.1 SmLINC06418-IBu 0.85 5.22e-05 8.00e-04
Smp_122230.1 SmLINC06449-IBu 0.81 2.00e-04 2.40e-03
Smp_122230.1 SmLINC06543-IBu 0.93 4.55e-07 2.94e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_122230.1 0 0.05 1.65 4.51 4.71
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_122230.1 Smp_051210.3 0.90 2.73e-06 1.00e-04
Smp_122230.1 Smp_056460.1 0.90 3.39e-06 1.00e-04
Smp_122230.1 Smp_058660.1 0.92 6.27e-07 3.85e-05
Smp_122230.1 Smp_081920.1 0.91 2.25e-06 9.45e-05
Smp_122230.1 Smp_123550.1 0.96 7.01e-09 1.80e-06
Smp_137320.1 Smp_122230.1 0.93 3.39e-07 2.51e-05
Smp_122230.1 Smp_141680.1 0.93 2.93e-07 2.26e-05
Smp_122230.1 Smp_145400.1 0.93 4.51e-07 3.05e-05
Smp_122230.1 Smp_151120.1 0.95 3.60e-08 5.41e-06
Smp_122230.1 Smp_156930.1 0.91 2.26e-06 9.49e-05
Smp_122230.1 Smp_166860.1 0.92 5.81e-07 3.64e-05
Smp_122230.1 Smp_172480.1 0.91 1.87e-06 8.30e-05
Smp_122230.1 Smp_172960.1 0.93 2.71e-07 2.15e-05
Smp_194860.1 Smp_122230.1 0.94 1.12e-07 1.17e-05
Smp_122230.1 Smp_203090.1 0.91 2.07e-06 8.92e-05
Smp_122230.1 Smp_205270.1 0.92 5.88e-07 3.67e-05