Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_121930.2 Data

Correlation between Smp_121930.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_121930.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_121930.2 0 1.74 1.71 6.11 8.12

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_121930.2 SmLINC00001-IBu 0.96 3.90e-09 1.14e-06
Smp_121930.2 SmLINC00004-IBu 0.95 4.36e-08 5.81e-06
Smp_121930.2 SmLINC00007-IBu 0.80 2.00e-04 2.80e-03
Smp_121930.2 SmLINC00525-IBu 0.80 3.00e-04 3.30e-03
Smp_121930.2 SmLINC01084-IBu 0.80 3.00e-04 3.30e-03
Smp_121930.2 SmLINC01520-IBu 0.90 3.61e-06 1.00e-04
Smp_121930.2 SmLINC02029-IBu 0.90 3.75e-06 1.00e-04
Smp_121930.2 SmLINC02376-IBu 0.94 8.96e-08 9.51e-06
Smp_121930.2 SmLINC02394-IBu 0.88 1.11e-05 2.00e-04
Smp_121930.2 SmLINC02539-IBu 0.91 1.92e-06 8.18e-05
Smp_121930.2 SmLINC02540-IBu 0.85 4.23e-05 7.00e-04
Smp_121930.2 SmLINC02577-IBu 0.92 1.06e-06 5.36e-05
Smp_121930.2 SmLINC02783-IBu 0.91 2.11e-06 8.72e-05
Smp_121930.2 SmLINC02786-IBu 0.82 1.00e-04 1.70e-03
Smp_121930.2 SmLINC03326-IBu 0.91 1.32e-06 6.27e-05
Smp_121930.2 SmLINC03658-IBu 0.87 2.29e-05 4.00e-04
Smp_121930.2 SmLINC04235-IBu 0.98 5.30e-11 7.12e-08
Smp_121930.2 SmLINC04237-IBu 0.83 1.00e-04 1.60e-03
Smp_121930.2 SmLINC04421-IBu 0.86 3.11e-05 6.00e-04
Smp_121930.2 SmLINC04423-IBu 0.88 1.39e-05 3.00e-04
Smp_121930.2 SmLINC04627-IBu 0.92 6.47e-07 3.77e-05
Smp_121930.2 SmLINC05289-IBu 0.89 7.77e-06 2.00e-04
Smp_121930.2 SmLINC05404-IBu 0.88 8.83e-06 2.00e-04
Smp_121930.2 SmLINC05604-IBu 0.91 2.46e-06 9.74e-05
Smp_121930.2 SmLINC05684-IBu 0.92 7.85e-07 4.32e-05
Smp_121930.2 SmLINC06024-IBu 0.84 6.36e-05 1.00e-03
Smp_121930.2 SmLINC06239-IBu 0.95 4.49e-08 5.92e-06

Correlation between Smp_121930.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_121930.2 0 1.74 1.71 6.11 8.12
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_121930.2 0.91 1.50e-06 7.12e-05
Smp_004420.3 Smp_121930.2 0.94 1.65e-07 1.53e-05
Smp_004780.3 Smp_121930.2 0.93 4.16e-07 2.89e-05
Smp_007950.1 Smp_121930.2 0.90 3.97e-06 1.00e-04
Smp_016490.2 Smp_121930.2 0.97 2.32e-10 2.00e-07
Smp_024180.1 Smp_121930.2 0.91 1.58e-06 7.38e-05
Smp_024180.2 Smp_121930.2 0.92 1.18e-06 6.00e-05
Smp_121930.2 Smp_028870.1 0.97 2.80e-10 2.25e-07
Smp_121930.2 Smp_037720.1 0.90 3.73e-06 1.00e-04
Smp_050350.3 Smp_121930.2 0.90 2.98e-06 1.00e-04
Smp_085180.1 Smp_121930.2 0.96 6.81e-09 1.77e-06
Smp_086450.3 Smp_121930.2 0.92 1.05e-06 5.54e-05
Smp_121930.2 Smp_102780.1 0.97 1.10e-09 5.43e-07
Smp_121930.2 Smp_105450.2 0.92 1.19e-06 6.06e-05
Smp_123880.1 Smp_121930.2 0.93 3.66e-07 2.65e-05
Smp_121930.2 Smp_130100.1 0.97 2.11e-10 1.87e-07
Smp_130970.1 Smp_121930.2 0.91 2.23e-06 9.39e-05
Smp_121930.2 Smp_131410.1 0.93 2.30e-07 1.92e-05
Smp_121930.2 Smp_131490.1 0.97 1.18e-09 5.69e-07
Smp_136730.1 Smp_121930.2 0.90 3.12e-06 1.00e-04
Smp_121930.2 Smp_137700.1 0.93 3.91e-07 2.77e-05
Smp_137720.1 Smp_121930.2 0.95 4.26e-08 6.06e-06
Smp_137810.1 Smp_121930.2 0.92 7.91e-07 4.52e-05
Smp_138360.1 Smp_121930.2 0.92 8.98e-07 4.94e-05
Smp_139160.1 Smp_121930.2 0.93 3.20e-07 2.41e-05
Smp_139240.1 Smp_121930.2 0.93 4.98e-07 3.28e-05
Smp_140720.1 Smp_121930.2 0.94 8.48e-08 9.67e-06
Smp_144440.1 Smp_121930.2 0.90 2.81e-06 1.00e-04
Smp_155570.1 Smp_121930.2 0.95 3.41e-08 5.22e-06
Smp_159650.1 Smp_121930.2 0.99 1.64e-12 8.99e-09
Smp_162320.1 Smp_121930.2 0.96 7.42e-09 1.87e-06
Smp_163700.1 Smp_121930.2 0.90 2.53e-06 1.00e-04
Smp_121930.2 Smp_164320.1 0.95 2.38e-08 4.08e-06
Smp_181070.1 Smp_121930.2 0.95 5.46e-08 7.17e-06
Smp_187140.1 Smp_121930.2 0.94 1.56e-07 1.46e-05
Smp_194380.1 Smp_121930.2 0.91 1.57e-06 7.36e-05
Smp_121930.2 Smp_194910.1 0.94 7.79e-08 9.13e-06
Smp_121930.2 Smp_202610.1 0.96 8.37e-09 2.02e-06
Smp_203030.1 Smp_121930.2 0.98 1.63e-10 1.59e-07
Smp_205580.1 Smp_121930.2 0.94 1.23e-07 1.24e-05