Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_121610.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_121610.2 0 -2.28 -2.53 2.07 1.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_121610.2 SmLINC00369-IBu 0.82 1.00e-04 1.90e-03
Smp_121610.2 SmLINC00477-IBu 0.86 3.77e-05 6.00e-04
Smp_121610.2 SmLINC00484-IBu 0.85 4.98e-05 8.00e-04
Smp_121610.2 SmLINC00548-IBu 0.82 1.00e-04 2.10e-03
Smp_121610.2 SmLINC00769-IBu 0.87 2.45e-05 5.00e-04
Smp_121610.2 SmLINC01066-IBu 0.81 1.00e-04 2.20e-03
Smp_121610.2 SmLINC01122-IBu 0.83 9.19e-05 1.30e-03
Smp_121610.2 SmLINC01139-IBu 0.84 6.51e-05 1.00e-03
Smp_121610.2 SmLINC01433-IBu 0.81 2.00e-04 2.30e-03
Smp_121610.2 SmLINC01435-IBu 0.83 1.00e-04 1.40e-03
Smp_121610.2 SmLINC01538-IBu 0.85 5.29e-05 8.00e-04
Smp_121610.2 SmLINC01569-IBu 0.83 1.00e-04 1.40e-03
Smp_121610.2 SmLINC01733-IBu 0.83 9.22e-05 1.30e-03
Smp_121610.2 SmLINC01746-IBu 0.89 5.04e-06 1.00e-04
Smp_121610.2 SmLINC01822-IBu 0.82 1.00e-04 1.70e-03
Smp_121610.2 SmLINC03309-IBu 0.86 3.10e-05 6.00e-04
Smp_121610.2 SmLINC03542-IBu 0.85 4.90e-05 8.00e-04
Smp_121610.2 SmLINC03693-IBu 0.81 2.00e-04 2.60e-03
Smp_121610.2 SmLINC04054-IBu 0.87 1.98e-05 4.00e-04
Smp_121610.2 SmLINC04345-IBu 0.90 4.73e-06 1.00e-04
Smp_121610.2 SmLINC04475-IBu 0.86 2.96e-05 5.00e-04
Smp_121610.2 SmLINC04521-IBu 0.80 2.00e-04 3.00e-03
Smp_121610.2 SmLINC04637-IBu 0.81 1.00e-04 2.20e-03
Smp_121610.2 SmLINC04663-IBu 0.88 9.18e-06 2.00e-04
Smp_121610.2 SmLINC04747-IBu 0.88 1.34e-05 3.00e-04
Smp_121610.2 SmLINC04769-IBu 0.84 8.55e-05 1.20e-03
Smp_121610.2 SmLINC05009-IBu 0.81 2.00e-04 2.50e-03
Smp_121610.2 SmLINC05171-IBu 0.85 5.35e-05 8.00e-04
Smp_121610.2 SmLINC05258-IBu 0.85 4.88e-05 8.00e-04
Smp_121610.2 SmLINC06007-IBu 0.83 1.00e-04 1.50e-03
Smp_121610.2 SmLINC06010-IBu 0.82 1.00e-04 1.70e-03
Smp_121610.2 SmLINC06221-IBu 0.84 7.87e-05 1.10e-03
Smp_121610.2 SmLINC06418-IBu 0.89 8.13e-06 2.00e-04
Smp_121610.2 SmLINC06444-IBu 0.86 3.00e-05 5.00e-04
Smp_121610.2 SmLINC06449-IBu 0.87 2.24e-05 4.00e-04
Smp_121610.2 SmLINC06537-IBu 0.90 3.88e-06 1.00e-04
Smp_121610.2 SmLINC06543-IBu 0.84 7.69e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_121610.2 0 -2.28 -2.53 2.07 1.13
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_164550.1 0 5.78 6.30 11.08 9.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154190.1 Smp_121610.2 0.9 3.75e-06 1.00e-04
Smp_121610.2 Smp_164550.1 0.9 3.22e-06 1.00e-04