Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_121070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_121070.1 0 -4.74 0.09 3.27 7.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_121070.1 SmLINC00001-IBu 0.82 1.00e-04 2.10e-03
Smp_121070.1 SmLINC00004-IBu 0.80 2.00e-04 2.70e-03
Smp_121070.1 SmLINC02029-IBu 0.83 1.00e-04 1.50e-03
Smp_121070.1 SmLINC02376-IBu 0.87 1.77e-05 4.00e-04
Smp_121070.1 SmLINC02577-IBu 0.80 3.00e-04 3.40e-03
Smp_121070.1 SmLINC02783-IBu 0.83 9.74e-05 1.30e-03
Smp_121070.1 SmLINC02786-IBu 0.80 2.00e-04 2.90e-03
Smp_121070.1 SmLINC03658-IBu 0.81 2.00e-04 2.60e-03
Smp_121070.1 SmLINC04235-IBu 0.94 1.42e-07 1.30e-05
Smp_121070.1 SmLINC04627-IBu 0.88 1.16e-05 2.00e-04
Smp_121070.1 SmLINC05404-IBu 0.86 3.43e-05 6.00e-04
Smp_121070.1 SmLINC05684-IBu 0.86 3.77e-05 6.00e-04
Smp_121070.1 SmLINC06239-IBu 0.98 8.62e-12 2.27e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_121070.1 0.98 3.97e-12 1.55e-08
Smp_121070.1 Smp_000410.1 0.92 1.00e-06 5.35e-05
Smp_121070.1 Smp_000420.1 0.95 5.49e-08 7.20e-06
Smp_004420.3 Smp_121070.1 0.92 5.70e-07 3.60e-05
Smp_121070.1 Smp_033250.1 0.93 3.09e-07 2.35e-05
Smp_121070.1 Smp_077920.1 0.94 1.07e-07 1.13e-05
Smp_121070.1 Smp_130100.1 0.90 4.34e-06 1.00e-04
Smp_121070.1 Smp_130970.1 0.99 1.17e-13 1.78e-09
Smp_121070.1 Smp_131110.2 0.96 8.30e-09 2.01e-06
Smp_137460.1 Smp_121070.1 0.94 1.82e-07 1.63e-05
Smp_121070.1 Smp_137700.1 0.93 5.16e-07 3.35e-05
Smp_121070.1 Smp_138360.1 0.96 1.33e-08 2.76e-06
Smp_121070.1 Smp_144440.1 0.97 3.21e-10 2.47e-07
Smp_152150.1 Smp_121070.1 0.90 3.26e-06 1.00e-04
Smp_121070.1 Smp_155310.1 0.94 1.60e-07 1.49e-05
Smp_121070.1 Smp_159650.1 0.91 2.03e-06 8.80e-05
Smp_164400.1 Smp_121070.1 0.90 3.73e-06 1.00e-04
Smp_175560.1 Smp_121070.1 0.97 2.21e-09 8.48e-07
Smp_181070.1 Smp_121070.1 0.90 4.65e-06 1.00e-04
Smp_121070.1 Smp_191910.1 0.94 6.28e-08 7.88e-06