Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_120960.1 Data

Correlation between Smp_120960.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_120960.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_120960.1 0 -7.03 -0.00 0.79 1.85

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120960.1 SmLINC00001-IBu 0.80 3.00e-04 3.20e-03
Smp_120960.1 SmLINC00004-IBu 0.83 1.00e-04 1.60e-03
Smp_120960.1 SmLINC00294-IBu -0.80 3.00e-04 3.20e-03
Smp_120960.1 SmLINC00525-IBu 0.84 6.13e-05 9.00e-04
Smp_120960.1 SmLINC01084-IBu 0.85 5.20e-05 8.00e-04
Smp_120960.1 SmLINC01431-IBu 0.80 2.00e-04 3.00e-03
Smp_120960.1 SmLINC03849-IBu -0.92 1.10e-06 5.51e-05
Smp_120960.1 SmLINC04423-IBu 0.81 2.00e-04 2.40e-03
Smp_120960.1 SmLINC06024-IBu 0.88 1.29e-05 3.00e-04

Correlation between Smp_120960.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_120960.1 0 -7.03 -0.00 0.79 1.85

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120960.1 Smp_048260.1 -0.91 1.90e-06 8.41e-05