Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_120920.3 Data

Correlation between Smp_120920.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.3 SmLINC00554-IBu 0.63 1.15e-02 3.85e-02
Smp_120920.3 SmLINC00556-IBu 0.72 2.10e-03 1.10e-02

Correlation between Smp_120920.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.3 SmLINC02039-IBu 0.90 4.09e-06 1.00e-04
Smp_120920.3 SmLINC02678-IBu 0.84 6.12e-05 9.00e-04
Smp_120920.3 SmLINC02888-IBu 0.86 2.75e-05 5.00e-04
Smp_120920.3 SmLINC05989-IBu 0.91 1.93e-06 8.19e-05
Smp_120920.3 SmLINC06128-IBu 0.90 3.69e-06 1.00e-04
Smp_120920.3 SmLINC06903-IBu 0.80 3.00e-04 3.40e-03

Correlation between Smp_120920.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_120920.3 0.93 3.11e-07 2.36e-05
Smp_018880.1 Smp_120920.3 0.95 5.04e-08 6.79e-06
Smp_071380.2 Smp_120920.3 0.91 1.78e-06 8.01e-05
Smp_102670.1 Smp_120920.3 0.92 1.17e-06 5.99e-05
Smp_106390.1 Smp_120920.3 0.96 9.81e-09 2.25e-06
Smp_134410.1 Smp_120920.3 0.92 8.00e-07 4.56e-05
Smp_145810.2 Smp_120920.3 0.91 1.29e-06 6.41e-05
Smp_149670.1 Smp_120920.3 0.95 2.78e-08 4.53e-06
Smp_150690.2 Smp_120920.3 0.91 2.22e-06 9.38e-05
Smp_120920.3 Smp_153240.1 0.90 4.71e-06 1.00e-04
Smp_178240.1 Smp_120920.3 0.91 1.85e-06 8.24e-05
Smp_185360.1 Smp_120920.3 0.92 1.12e-06 5.78e-05