Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_120920.2 Data

Correlation between Smp_120920.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
Smp_120920.2 0 -0.10 -2.98 -3.87 -4.44

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.2 SmLINC00554-IBu 0.87 2.46e-05 3.00e-04
Smp_120920.2 SmLINC00556-IBu 0.70 3.40e-03 1.58e-02

Correlation between Smp_120920.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_120920.2 0 -0.10 -2.98 -3.87 -4.44

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.2 SmLINC00037-IBu 0.88 9.87e-06 2.00e-04
Smp_120920.2 SmLINC00133-IBu 0.87 1.92e-05 4.00e-04
Smp_120920.2 SmLINC00282-IBu 0.90 2.96e-06 1.00e-04
Smp_120920.2 SmLINC00554-IBu 0.87 2.46e-05 5.00e-04
Smp_120920.2 SmLINC00893-IBu 0.85 5.25e-05 8.00e-04
Smp_120920.2 SmLINC01462-IBu 0.85 5.85e-05 9.00e-04
Smp_120920.2 SmLINC01486-IBu 0.82 1.00e-04 1.70e-03
Smp_120920.2 SmLINC01637-IBu 0.86 3.28e-05 6.00e-04
Smp_120920.2 SmLINC02038-IBu 0.80 3.00e-04 3.40e-03
Smp_120920.2 SmLINC02255-IBu 0.81 1.00e-04 2.20e-03
Smp_120920.2 SmLINC03056-IBu 0.83 1.00e-04 1.40e-03
Smp_120920.2 SmLINC03769-IBu 0.84 6.56e-05 1.00e-03
Smp_120920.2 SmLINC03848-IBu 0.85 4.96e-05 8.00e-04
Smp_120920.2 SmLINC04075-IBu 0.82 1.00e-04 2.00e-03
Smp_120920.2 SmLINC04271-IBu 0.83 9.59e-05 1.30e-03
Smp_120920.2 SmLINC05284-IBu 0.89 8.75e-06 2.00e-04
Smp_120920.2 SmLINC05716-IBu 0.80 2.00e-04 2.80e-03
Smp_120920.2 SmLINC05840-IBu 0.80 3.00e-04 3.40e-03
Smp_120920.2 SmLINC06535-IBu 0.82 1.00e-04 2.10e-03
Smp_120920.2 SmLINC06903-IBu 0.84 6.00e-05 9.00e-04

Correlation between Smp_120920.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data