Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_120920.1 Data

Correlation between Smp_120920.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
Smp_120920.1 0 -0.66 -0.48 -5.47 -6.72

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.1 SmLINC00556-IBu 0.56 2.95e-02 7.60e-02

Correlation between Smp_120920.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_120920.1 0 -0.66 -0.48 -5.47 -6.72

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.1 SmLINC00001-IBu -0.82 1.00e-04 2.00e-03
Smp_120920.1 SmLINC00004-IBu -0.84 6.56e-05 1.00e-03
Smp_120920.1 SmLINC00369-IBu -0.85 5.30e-05 8.00e-04
Smp_120920.1 SmLINC00525-IBu -0.84 8.05e-05 1.20e-03
Smp_120920.1 SmLINC01084-IBu -0.86 2.85e-05 5.00e-04
Smp_120920.1 SmLINC01122-IBu -0.81 2.00e-04 2.70e-03
Smp_120920.1 SmLINC01431-IBu -0.86 2.75e-05 5.00e-04
Smp_120920.1 SmLINC01569-IBu -0.80 3.00e-04 3.20e-03
Smp_120920.1 SmLINC02084-IBu -0.84 7.92e-05 1.10e-03
Smp_120920.1 SmLINC02394-IBu -0.81 2.00e-04 2.50e-03
Smp_120920.1 SmLINC02546-IBu -0.81 2.00e-04 2.70e-03
Smp_120920.1 SmLINC03927-IBu -0.80 3.00e-04 3.30e-03
Smp_120920.1 SmLINC04421-IBu -0.86 3.91e-05 7.00e-04
Smp_120920.1 SmLINC04423-IBu -0.88 1.33e-05 3.00e-04
Smp_120920.1 SmLINC04478-IBu -0.82 1.00e-04 2.00e-03
Smp_120920.1 SmLINC04521-IBu -0.81 1.00e-04 2.20e-03
Smp_120920.1 SmLINC05147-IBu -0.80 3.00e-04 3.30e-03
Smp_120920.1 SmLINC05289-IBu -0.82 1.00e-04 1.70e-03
Smp_120920.1 SmLINC05604-IBu -0.83 9.19e-05 1.30e-03
Smp_120920.1 SmLINC06024-IBu -0.87 2.28e-05 4.00e-04
Smp_120920.1 SmLINC06489-IBu 0.84 8.03e-05 1.20e-03
Smp_120920.1 SmLINC06490-IBu 0.87 2.21e-05 4.00e-04

Correlation between Smp_120920.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_120920.1 0 -0.66 -0.48 -5.47 -6.72

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038870.2 Smp_120920.1 -0.9 3.12e-06 1.00e-04