Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_120330.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_120330.1 0 -0.78 -1.75 -6.70 -8.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120330.1 SmLINC00001-IBu -0.80 3.00e-04 3.40e-03
Smp_120330.1 SmLINC00004-IBu -0.83 1.00e-04 1.50e-03
Smp_120330.1 SmLINC00369-IBu -0.83 1.00e-04 1.60e-03
Smp_120330.1 SmLINC00376-IBu -0.82 1.00e-04 1.90e-03
Smp_120330.1 SmLINC00525-IBu -0.86 3.35e-05 6.00e-04
Smp_120330.1 SmLINC01084-IBu -0.84 7.67e-05 1.10e-03
Smp_120330.1 SmLINC01431-IBu -0.85 5.71e-05 9.00e-04
Smp_120330.1 SmLINC02026-IBu 0.84 6.29e-05 1.00e-03
Smp_120330.1 SmLINC02084-IBu -0.82 1.00e-04 1.90e-03
Smp_120330.1 SmLINC02546-IBu -0.80 3.00e-04 3.40e-03
Smp_120330.1 SmLINC04421-IBu -0.85 4.25e-05 7.00e-04
Smp_120330.1 SmLINC04478-IBu -0.80 2.00e-04 3.00e-03
Smp_120330.1 SmLINC04521-IBu -0.80 2.00e-04 2.90e-03
Smp_120330.1 SmLINC05289-IBu -0.81 2.00e-04 2.60e-03
Smp_120330.1 SmLINC05604-IBu -0.82 1.00e-04 1.90e-03
Smp_120330.1 SmLINC06024-IBu -0.84 6.94e-05 1.00e-03
Smp_120330.1 SmLINC06490-IBu 0.96 9.31e-09 2.03e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_120330.1 0 -0.78 -1.75 -6.70 -8.97
Smp_183870.1 0 -0.34 -1.88 -9.35 -11.39
Smp_205470.1 0 0.16 -0.98 -10.60 -7.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 Smp_120330.1 0.90 3.04e-06 1.00e-04
Smp_183870.1 Smp_120330.1 0.93 4.99e-07 3.28e-05
Smp_205470.1 Smp_120330.1 0.92 6.31e-07 3.86e-05