Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_119910.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_119910.1 0 0.30 1.25 3.12 4.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_119910.1 SmLINC00001-IBu 0.91 1.57e-06 7.08e-05
Smp_119910.1 SmLINC00004-IBu 0.96 5.18e-09 1.38e-06
Smp_119910.1 SmLINC00525-IBu 0.91 2.14e-06 8.83e-05
Smp_119910.1 SmLINC01084-IBu 0.90 3.00e-06 1.00e-04
Smp_119910.1 SmLINC01431-IBu 0.88 1.18e-05 3.00e-04
Smp_119910.1 SmLINC01432-IBu 0.83 1.00e-04 1.50e-03
Smp_119910.1 SmLINC01520-IBu 0.84 6.79e-05 1.00e-03
Smp_119910.1 SmLINC02029-IBu 0.89 8.13e-06 2.00e-04
Smp_119910.1 SmLINC02084-IBu 0.82 1.00e-04 2.10e-03
Smp_119910.1 SmLINC02255-IBu -0.83 1.00e-04 1.60e-03
Smp_119910.1 SmLINC02376-IBu 0.83 1.00e-04 1.40e-03
Smp_119910.1 SmLINC02394-IBu 0.83 1.00e-04 1.50e-03
Smp_119910.1 SmLINC02539-IBu 0.88 1.12e-05 2.00e-04
Smp_119910.1 SmLINC02545-IBu 0.89 7.45e-06 2.00e-04
Smp_119910.1 SmLINC02546-IBu 0.83 9.88e-05 1.40e-03
Smp_119910.1 SmLINC02577-IBu 0.85 4.27e-05 7.00e-04
Smp_119910.1 SmLINC02630-IBu -0.81 1.00e-04 2.20e-03
Smp_119910.1 SmLINC02783-IBu 0.80 3.00e-04 3.20e-03
Smp_119910.1 SmLINC03326-IBu 0.80 2.00e-04 2.80e-03
Smp_119910.1 SmLINC03849-IBu -0.82 1.00e-04 1.80e-03
Smp_119910.1 SmLINC03927-IBu 0.87 2.34e-05 4.00e-04
Smp_119910.1 SmLINC04235-IBu 0.92 1.15e-06 5.70e-05
Smp_119910.1 SmLINC04421-IBu 0.92 1.18e-06 5.78e-05
Smp_119910.1 SmLINC04423-IBu 0.95 3.62e-08 5.12e-06
Smp_119910.1 SmLINC04478-IBu 0.82 1.00e-04 1.80e-03
Smp_119910.1 SmLINC04896-IBu 0.84 8.84e-05 1.20e-03
Smp_119910.1 SmLINC05274-IBu -0.81 1.00e-04 2.20e-03
Smp_119910.1 SmLINC05289-IBu 0.86 3.38e-05 6.00e-04
Smp_119910.1 SmLINC05404-IBu 0.86 2.55e-05 5.00e-04
Smp_119910.1 SmLINC05604-IBu 0.93 2.36e-07 1.86e-05
Smp_119910.1 SmLINC05684-IBu 0.84 6.05e-05 9.00e-04
Smp_119910.1 SmLINC06024-IBu 0.93 4.46e-07 2.90e-05
Smp_119910.1 SmLINC06239-IBu 0.85 4.12e-05 7.00e-04
Smp_119910.1 SmLINC06415-IBu 0.89 5.91e-06 1.00e-04
Smp_119910.1 SmLINC06535-IBu -0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_119910.1 0 0.30 1.25 3.12 4.39
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_119910.1 0.96 1.18e-08 2.54e-06
Smp_033260.1 Smp_119910.1 0.93 4.48e-07 3.04e-05
Smp_050350.3 Smp_119910.1 0.96 1.25e-08 2.65e-06
Smp_119910.1 Smp_052280.2 0.93 2.26e-07 1.89e-05
Smp_056460.1 Smp_119910.1 0.91 2.23e-06 9.40e-05
Smp_086450.3 Smp_119910.1 0.91 1.47e-06 7.01e-05
Smp_094050.1 Smp_119910.1 0.94 6.11e-08 7.73e-06
Smp_095410.1 Smp_119910.1 0.91 1.21e-06 6.13e-05
Smp_119910.1 Smp_130100.1 0.90 3.30e-06 1.00e-04
Smp_137810.1 Smp_119910.1 0.90 4.67e-06 1.00e-04
Smp_140720.1 Smp_119910.1 0.94 6.44e-08 8.01e-06
Smp_155570.1 Smp_119910.1 0.91 2.46e-06 1.00e-04
Smp_169670.1 Smp_119910.1 0.92 9.24e-07 5.04e-05
Smp_192780.1 Smp_119910.1 0.96 1.12e-08 2.46e-06
Smp_119910.1 Smp_202610.1 0.90 4.74e-06 1.00e-04
Smp_203030.1 Smp_119910.1 0.92 7.94e-07 4.53e-05