Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_119730.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_119730.1 SmLINC02039-IBu 0.88 1.17e-05 2.00e-04
Smp_119730.1 SmLINC05989-IBu 0.85 5.06e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_044280.2 0 -10.78 -4.06 -10.78 -10.78
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_119730.1 0.97 9.27e-10 4.85e-07
Smp_033000.1 Smp_119730.1 0.90 3.28e-06 1.00e-04
Smp_035270.1 Smp_119730.1 0.92 6.89e-07 4.10e-05
Smp_119730.1 Smp_044280.2 0.92 8.96e-07 4.93e-05
Smp_119730.1 Smp_058360.2 0.95 2.10e-08 3.75e-06