Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_119260.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_119260.1 0 0.00 -1.60 -4.13 -4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_119260.1 SmLINC00037-IBu 0.82 1.00e-04 1.80e-03
Smp_119260.1 SmLINC01462-IBu 0.80 2.00e-04 3.00e-03
Smp_119260.1 SmLINC01637-IBu 0.85 5.18e-05 8.00e-04
Smp_119260.1 SmLINC02038-IBu 0.88 1.40e-05 3.00e-04
Smp_119260.1 SmLINC03769-IBu 0.83 1.00e-04 1.40e-03
Smp_119260.1 SmLINC03930-IBu 0.80 2.00e-04 3.00e-03
Smp_119260.1 SmLINC04075-IBu 0.82 1.00e-04 2.10e-03
Smp_119260.1 SmLINC05284-IBu 0.80 2.00e-04 3.10e-03
Smp_119260.1 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_085110.1 0 0.63 -0.75 -11.89 -11.89
Smp_119260.1 0 0.00 -1.60 -4.13 -4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_085110.1 Smp_119260.1 0.91 1.81e-06 8.13e-05