Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_119130.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_119130.1 0 -0.11 -2.24 -9.20 -4.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_119130.1 SmLINC00037-IBu 0.86 3.83e-05 7.00e-04
Smp_119130.1 SmLINC00133-IBu 0.84 8.01e-05 1.20e-03
Smp_119130.1 SmLINC00282-IBu 0.87 1.53e-05 3.00e-04
Smp_119130.1 SmLINC00784-IBu 0.86 3.40e-05 6.00e-04
Smp_119130.1 SmLINC01462-IBu 0.82 1.00e-04 1.90e-03
Smp_119130.1 SmLINC01486-IBu 0.84 6.72e-05 1.00e-03
Smp_119130.1 SmLINC01637-IBu 0.88 9.17e-06 2.00e-04
Smp_119130.1 SmLINC02255-IBu 0.83 1.00e-04 1.40e-03
Smp_119130.1 SmLINC02630-IBu 0.83 9.16e-05 1.30e-03
Smp_119130.1 SmLINC03056-IBu 0.83 1.00e-04 1.50e-03
Smp_119130.1 SmLINC03848-IBu 0.83 9.88e-05 1.40e-03
Smp_119130.1 SmLINC03930-IBu 0.81 1.00e-04 2.20e-03
Smp_119130.1 SmLINC04106-IBu 0.87 1.65e-05 3.00e-04
Smp_119130.1 SmLINC04271-IBu 0.82 1.00e-04 1.90e-03
Smp_119130.1 SmLINC04366-IBu 0.86 3.77e-05 6.00e-04
Smp_119130.1 SmLINC05284-IBu 0.89 5.77e-06 1.00e-04
Smp_119130.1 SmLINC05716-IBu 0.89 7.35e-06 2.00e-04
Smp_119130.1 SmLINC05720-IBu 0.98 1.58e-10 1.43e-07
Smp_119130.1 SmLINC06535-IBu 0.87 2.32e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_119130.1 0 -0.11 -2.24 -9.20 -4.94
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184760.1 Smp_119130.1 0.91 1.25e-06 6.26e-05