Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_119050.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_119050.1 SmLINC02255-IBu 0.88 1.03e-05 2.00e-04
Smp_119050.1 SmLINC02630-IBu 0.88 1.34e-05 3.00e-04
Smp_119050.1 SmLINC02657-IBu 0.84 8.25e-05 1.20e-03
Smp_119050.1 SmLINC03848-IBu 0.84 7.28e-05 1.10e-03
Smp_119050.1 SmLINC05284-IBu 0.82 1.00e-04 2.10e-03
Smp_119050.1 SmLINC05989-IBu 0.89 6.69e-06 1.00e-04
Smp_119050.1 SmLINC06128-IBu 0.91 1.26e-06 6.07e-05
Smp_119050.1 SmLINC06535-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 Smp_119050.1 0.92 6.47e-07 3.93e-05
Smp_145810.2 Smp_119050.1 0.90 3.37e-06 1.00e-04
Smp_149670.1 Smp_119050.1 0.91 1.73e-06 7.85e-05
Smp_119050.1 Smp_168080.2 0.93 5.05e-07 3.30e-05
Smp_188900.1 Smp_119050.1 0.96 8.08e-09 1.98e-06
Smp_119050.1 Smp_195070.1 0.93 2.08e-07 1.79e-05
Smp_202140.1 Smp_119050.1 0.90 3.42e-06 1.00e-04