Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_118960.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_118960.1 SmLINC00372-IBu 0.87 1.56e-05 3.00e-04
Smp_118960.1 SmLINC01316-IBu 0.93 2.40e-07 1.88e-05
Smp_118960.1 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_118960.1 SmLINC06646-IBu 0.88 9.44e-06 2.00e-04
Smp_118960.1 SmLINC06836-IBu 0.85 4.53e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_118960.1 Smp_017650.1 0.92 9.60e-07 5.18e-05
Smp_118960.1 Smp_032120.1 0.91 1.98e-06 8.64e-05
Smp_118960.1 Smp_034840.1 0.91 1.20e-06 6.07e-05
Smp_118960.1 Smp_059340.3 0.94 1.72e-07 1.57e-05
Smp_059530.1 Smp_118960.1 0.94 8.76e-08 9.89e-06
Smp_118960.1 Smp_083380.2 0.94 1.13e-07 1.17e-05
Smp_118960.1 Smp_084940.2 0.92 8.61e-07 4.80e-05
Smp_103540.1 Smp_118960.1 0.90 3.37e-06 1.00e-04