Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_117170.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
Smp_117170.1 0 1.39 2.23 4.80 4.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_117170.1 SmLINC00548-IBu 0.80 2.00e-04 3.00e-03
Smp_117170.1 SmLINC01066-IBu 0.83 1.00e-04 1.50e-03
Smp_117170.1 SmLINC02630-IBu -0.80 2.00e-04 2.70e-03
Smp_117170.1 SmLINC03236-IBu 0.80 2.00e-04 2.80e-03
Smp_117170.1 SmLINC03693-IBu 0.84 7.41e-05 1.10e-03
Smp_117170.1 SmLINC04432-IBu 0.84 7.11e-05 1.10e-03
Smp_117170.1 SmLINC04475-IBu 0.84 6.38e-05 1.00e-03
Smp_117170.1 SmLINC04684-IBu 0.85 5.63e-05 9.00e-04
Smp_117170.1 SmLINC05009-IBu 0.80 3.00e-04 3.40e-03
Smp_117170.1 SmLINC05258-IBu 0.81 2.00e-04 2.50e-03
Smp_117170.1 SmLINC05632-IBu 0.80 2.00e-04 3.10e-03
Smp_117170.1 SmLINC05870-IBu 0.81 2.00e-04 2.30e-03
Smp_117170.1 SmLINC05990-IBu 0.81 2.00e-04 2.50e-03
Smp_117170.1 SmLINC06010-IBu 0.80 2.00e-04 2.80e-03
Smp_117170.1 SmLINC06221-IBu 0.85 4.28e-05 7.00e-04
Smp_117170.1 SmLINC06536-IBu 0.81 2.00e-04 2.70e-03