Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_116800.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_116800.1 0 -1.63 -2.12 -11.49 -11.49

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_116800.1 SmLINC00001-IBu -0.80 3.00e-04 3.20e-03
Smp_116800.1 SmLINC00004-IBu -0.82 1.00e-04 1.90e-03
Smp_116800.1 SmLINC00369-IBu -0.82 1.00e-04 1.70e-03
Smp_116800.1 SmLINC00376-IBu -0.86 3.59e-05 6.00e-04
Smp_116800.1 SmLINC00525-IBu -0.83 9.83e-05 1.30e-03
Smp_116800.1 SmLINC00633-IBu -0.80 2.00e-04 2.90e-03
Smp_116800.1 SmLINC01084-IBu -0.83 1.00e-04 1.60e-03
Smp_116800.1 SmLINC01171-IBu -0.80 3.00e-04 3.20e-03
Smp_116800.1 SmLINC01431-IBu -0.85 5.33e-05 8.00e-04
Smp_116800.1 SmLINC02084-IBu -0.82 1.00e-04 1.80e-03
Smp_116800.1 SmLINC02255-IBu 0.83 1.00e-04 1.40e-03
Smp_116800.1 SmLINC02657-IBu 0.81 2.00e-04 2.60e-03
Smp_116800.1 SmLINC04421-IBu -0.87 1.71e-05 3.00e-04
Smp_116800.1 SmLINC04478-IBu -0.80 2.00e-04 2.80e-03
Smp_116800.1 SmLINC04521-IBu -0.80 3.00e-04 3.30e-03
Smp_116800.1 SmLINC05289-IBu -0.80 3.00e-04 3.30e-03
Smp_116800.1 SmLINC05604-IBu -0.81 2.00e-04 2.50e-03
Smp_116800.1 SmLINC06145-IBu -0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00949-IBu 0 -2.39 -1.31 -4.76 -5.12
Smp_022640.1 0 -0.91 -1.49 -5.58 -3.97
Smp_035010.1 0 0.83 -0.28 3.11 3.90
Smp_112270.1 0 -1.48 -2.66 -5.23 -6.47
Smp_116800.1 0 -1.63 -2.12 -11.49 -11.49
Smp_185890.1 0 -1.37 -1.67 -7.65 -9.83
Smp_186170.1 0 -1.79 -1.59 -7.16 -8.78
Smp_189050.1 0 -1.35 -1.09 -8.51 -8.43
Smp_204390.1 0 1.69 0.93 3.73 4.78
Smp_207040.1 0 2.72 0.67 3.99 5.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_116800.1 SmLINC00949-IBu 0.90 3.14e-06 1.00e-04
Smp_116800.1 Smp_022640.1 0.90 3.54e-06 1.00e-04
Smp_116800.1 Smp_035010.1 -0.90 3.10e-06 1.00e-04
Smp_116800.1 Smp_112270.1 0.95 3.23e-08 5.02e-06
Smp_116800.1 Smp_185890.1 0.93 3.37e-07 2.50e-05
Smp_116800.1 Smp_186170.1 0.92 1.12e-06 5.79e-05
Smp_116800.1 Smp_189050.1 0.94 1.82e-07 1.63e-05
Smp_116800.1 Smp_204390.1 -0.90 2.68e-06 1.00e-04
Smp_116800.1 Smp_207040.1 -0.90 3.62e-06 1.00e-04