Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_116760.1 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_065470.1 0 -2.41 -6.05 -1.95 -2.93
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_190940.1 0 -3.61 -6.81 -3.30 -6.81
Smp_199230.1 0 -8.78 -8.78 -3.51 -8.10
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_201320.1 0 -1.71 -5.69 -7.19 -7.19
Smp_202540.1 0 -2.41 -1.38 -6.47 -8.50
Smp_203980.1 0 -0.92 -4.57 -6.89 -8.25
Smp_205870.1 0 -0.54 -2.25 -7.61 -12.32
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_116760.1 Smp_032990.1 0.94 1.75e-07 1.59e-05
Smp_065470.1 Smp_116760.1 0.90 3.04e-06 1.00e-04
Smp_116760.1 Smp_179460.1 0.94 1.62e-07 1.50e-05
Smp_183020.1 Smp_116760.1 0.92 5.71e-07 3.60e-05
Smp_116760.1 Smp_183020.6 0.92 5.71e-07 3.60e-05
Smp_116760.1 Smp_185350.1 0.96 2.79e-09 9.89e-07
Smp_116760.1 Smp_186130.2 0.98 3.77e-11 6.31e-08
Smp_188600.1 Smp_116760.1 0.93 3.50e-07 2.57e-05
Smp_190320.1 Smp_116760.1 0.90 4.50e-06 1.00e-04
Smp_190940.1 Smp_116760.1 0.90 3.98e-06 1.00e-04
Smp_116760.1 Smp_199230.1 0.93 3.21e-07 2.42e-05
Smp_116760.1 Smp_199840.1 0.94 1.69e-07 1.55e-05
Smp_116760.1 Smp_201320.1 0.96 5.98e-09 1.62e-06
Smp_202540.1 Smp_116760.1 0.92 5.78e-07 3.63e-05
Smp_116760.1 Smp_203980.1 0.93 2.22e-07 1.87e-05
Smp_116760.1 Smp_205870.1 0.91 2.09e-06 8.98e-05
Smp_116760.1 Smp_206130.1 0.93 2.95e-07 2.28e-05