Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_113760.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113760.1 SmLINC02888-IBu 0.81 2.00e-04 2.30e-03
Smp_113760.1 SmLINC06128-IBu 0.84 6.48e-05 1.00e-03
Smp_113760.1 SmLINC06892-IBu 0.95 1.69e-08 3.04e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_113760.1 0.90 4.57e-06 1.00e-04
Smp_113760.1 Smp_032990.1 0.91 1.62e-06 7.50e-05
Smp_036400.2 Smp_113760.1 0.94 1.18e-07 1.21e-05
Smp_065580.1 Smp_113760.1 0.90 3.18e-06 1.00e-04
Smp_066010.1 Smp_113760.1 0.95 1.73e-08 3.29e-06
Smp_067980.1 Smp_113760.1 0.93 3.58e-07 2.60e-05
Smp_113760.1 Smp_085290.3 0.97 1.85e-10 1.72e-07
Smp_106390.1 Smp_113760.1 0.94 6.21e-08 7.82e-06
Smp_140680.2 Smp_113760.1 0.94 8.69e-08 9.83e-06
Smp_145810.2 Smp_113760.1 0.94 1.02e-07 1.09e-05
Smp_150690.2 Smp_113760.1 0.98 8.97e-11 1.08e-07
Smp_178240.1 Smp_113760.1 0.92 8.74e-07 4.85e-05
Smp_113760.1 Smp_184460.1 0.98 5.61e-12 1.92e-08
Smp_185360.1 Smp_113760.1 0.98 1.41e-10 1.45e-07
Smp_188900.1 Smp_113760.1 0.94 8.67e-08 9.81e-06
Smp_202140.1 Smp_113760.1 0.94 6.50e-08 8.07e-06
Smp_206150.1 Smp_113760.1 0.95 2.62e-08 4.36e-06