Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_113660.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113660.1 SmLINC00525-IBu -0.81 1.00e-04 2.20e-03
Smp_113660.1 SmLINC01316-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01655-IBu 0 -1.59 -1.05 -9.22 -9.22
SmLINC03227-IBu 0 -1.25 0.94 -11.22 -11.22
SmLINC07019-IBu 0 -0.56 -0.21 -4.43 -4.44
Smp_042590.2 0 -1.65 -1.31 -11.45 -8.14
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_176200.1 0 -1.94 -1.89 -5.85 -6.22
Smp_205040.1 0 -0.10 1.21 -6.10 -8.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113660.1 SmLINC01655-IBu 0.92 6.59e-07 3.98e-05
Smp_113660.1 SmLINC03227-IBu 0.91 1.77e-06 8.00e-05
Smp_113660.1 SmLINC07019-IBu 0.90 3.49e-06 1.00e-04
Smp_113660.1 Smp_042590.2 0.91 1.41e-06 6.80e-05
Smp_113660.1 Smp_113620.3 0.90 4.24e-06 1.00e-04
Smp_113660.1 Smp_160410.1 0.90 4.23e-06 1.00e-04
Smp_113660.1 Smp_176200.1 0.95 3.53e-08 5.34e-06
Smp_205040.1 Smp_113660.1 0.91 2.37e-06 9.82e-05