Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_113620.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113620.3 SmLINC00372-IBu 0.85 5.88e-05 9.00e-04
Smp_113620.3 SmLINC00525-IBu -0.81 2.00e-04 2.50e-03
Smp_113620.3 SmLINC01084-IBu -0.80 3.00e-04 3.30e-03
Smp_113620.3 SmLINC01316-IBu 0.90 3.11e-06 1.00e-04
Smp_113620.3 SmLINC02026-IBu 0.81 2.00e-04 2.60e-03
Smp_113620.3 SmLINC06024-IBu -0.81 2.00e-04 2.60e-03
Smp_113620.3 SmLINC06490-IBu 0.87 1.91e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97
Smp_194060.1 0 0.19 1.68 -10.58 -10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 Smp_113620.3 0.90 2.76e-06 1.00e-04
Smp_098890.1 Smp_113620.3 0.92 1.03e-06 5.45e-05
Smp_113660.1 Smp_113620.3 0.90 4.24e-06 1.00e-04
Smp_194060.1 Smp_113620.3 0.91 1.61e-06 7.47e-05