Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_113620.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_113620.1 0 -0.81 -1.53 4.01 5.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113620.1 SmLINC00001-IBu 0.86 3.82e-05 7.00e-04
Smp_113620.1 SmLINC00004-IBu 0.88 1.39e-05 3.00e-04
Smp_113620.1 SmLINC01431-IBu 0.82 1.00e-04 1.90e-03
Smp_113620.1 SmLINC01733-IBu 0.81 2.00e-04 2.40e-03
Smp_113620.1 SmLINC02376-IBu 0.83 1.00e-04 1.40e-03
Smp_113620.1 SmLINC04235-IBu 0.84 8.29e-05 1.20e-03
Smp_113620.1 SmLINC04423-IBu 0.89 6.75e-06 2.00e-04
Smp_113620.1 SmLINC06024-IBu 0.84 6.57e-05 1.00e-03
Smp_113620.1 SmLINC06239-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_113620.1 0 -0.81 -1.53 4.01 5.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113620.1 Smp_024180.1 0.95 1.47e-08 2.95e-06
Smp_113620.1 Smp_024180.2 0.94 1.46e-07 1.40e-05
Smp_113620.1 Smp_094050.1 0.91 2.29e-06 9.58e-05