Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_113550.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_113550.1 0 0.10 -1.71 -6.16 -6.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_113550.1 SmLINC00037-IBu 0.87 1.55e-05 3.00e-04
Smp_113550.1 SmLINC00133-IBu 0.91 1.38e-06 6.47e-05
Smp_113550.1 SmLINC00282-IBu 0.86 2.64e-05 5.00e-04
Smp_113550.1 SmLINC00294-IBu 0.85 5.58e-05 9.00e-04
Smp_113550.1 SmLINC00893-IBu 0.85 4.43e-05 7.00e-04
Smp_113550.1 SmLINC01462-IBu 0.85 4.98e-05 8.00e-04
Smp_113550.1 SmLINC01486-IBu 0.92 8.21e-07 4.46e-05
Smp_113550.1 SmLINC01637-IBu 0.80 3.00e-04 3.20e-03
Smp_113550.1 SmLINC03362-IBu 0.83 1.00e-04 1.40e-03
Smp_113550.1 SmLINC03849-IBu 0.81 1.00e-04 2.20e-03
Smp_113550.1 SmLINC03930-IBu 0.83 9.47e-05 1.30e-03
Smp_113550.1 SmLINC04075-IBu 0.92 9.80e-07 5.05e-05
Smp_113550.1 SmLINC04178-IBu 0.86 2.68e-05 5.00e-04
Smp_113550.1 SmLINC04940-IBu 0.88 1.48e-05 3.00e-04
Smp_113550.1 SmLINC05716-IBu 0.83 1.00e-04 1.50e-03
Smp_113550.1 SmLINC05887-IBu 0.80 3.00e-04 3.40e-03
Smp_113550.1 SmLINC05888-IBu 0.80 2.00e-04 3.10e-03
Smp_113550.1 SmLINC06210-IBu 0.80 2.00e-04 2.80e-03
Smp_113550.1 SmLINC06535-IBu 0.87 1.56e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_113550.1 0 0.10 -1.71 -6.16 -6.16
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_113550.1 0.91 1.86e-06 8.28e-05
Smp_125070.1 Smp_113550.1 0.94 1.25e-07 1.26e-05
Smp_182090.1 Smp_113550.1 0.91 2.21e-06 9.34e-05
Smp_205330.1 Smp_113550.1 0.92 5.54e-07 3.52e-05