Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_111710.1 Data

Correlation between Smp_111710.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_111710.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111710.1 SmLINC00026-IBu 0.92 1.07e-06 5.38e-05
Smp_111710.1 SmLINC00037-IBu 0.91 2.36e-06 9.47e-05
Smp_111710.1 SmLINC00133-IBu 0.87 1.69e-05 3.00e-04
Smp_111710.1 SmLINC00282-IBu 0.86 3.10e-05 6.00e-04
Smp_111710.1 SmLINC00294-IBu 0.94 1.31e-07 1.24e-05
Smp_111710.1 SmLINC00893-IBu 0.88 1.44e-05 3.00e-04
Smp_111710.1 SmLINC01462-IBu 0.92 6.59e-07 3.82e-05
Smp_111710.1 SmLINC01486-IBu 0.90 3.95e-06 1.00e-04
Smp_111710.1 SmLINC01637-IBu 0.94 1.12e-07 1.11e-05
Smp_111710.1 SmLINC03056-IBu 0.87 1.88e-05 4.00e-04
Smp_111710.1 SmLINC03395-IBu 0.88 1.45e-05 3.00e-04
Smp_111710.1 SmLINC03930-IBu 0.83 9.67e-05 1.30e-03
Smp_111710.1 SmLINC04075-IBu 0.90 3.74e-06 1.00e-04
Smp_111710.1 SmLINC04106-IBu 0.86 3.58e-05 6.00e-04
Smp_111710.1 SmLINC04129-IBu 0.86 3.66e-05 6.00e-04
Smp_111710.1 SmLINC04271-IBu 0.92 1.15e-06 5.68e-05
Smp_111710.1 SmLINC04366-IBu 0.87 2.40e-05 5.00e-04
Smp_111710.1 SmLINC05284-IBu 0.85 5.53e-05 9.00e-04
Smp_111710.1 SmLINC05716-IBu 0.91 2.29e-06 9.26e-05
Smp_111710.1 SmLINC05720-IBu 0.84 7.80e-05 1.10e-03
Smp_111710.1 SmLINC05887-IBu 0.83 8.91e-05 1.30e-03
Smp_111710.1 SmLINC05888-IBu 0.83 1.00e-04 1.40e-03
Smp_111710.1 SmLINC06024-IBu -0.83 1.00e-04 1.50e-03
Smp_111710.1 SmLINC06489-IBu 0.85 5.95e-05 9.00e-04

Correlation between Smp_111710.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111710.1 Smp_109340.1 0.90 4.10e-06 1.00e-04
Smp_111710.1 Smp_184180.1 0.90 2.52e-06 1.00e-04
Smp_111710.1 Smp_184710.1 0.90 3.49e-06 1.00e-04
Smp_212510.1 Smp_111710.1 0.92 8.23e-07 4.65e-05