Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_111340.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_111340.1 0 -0.73 -0.50 -5.92 -6.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111340.1 SmLINC00001-IBu -0.81 2.00e-04 2.60e-03
Smp_111340.1 SmLINC00004-IBu -0.81 1.00e-04 2.20e-03
Smp_111340.1 SmLINC00037-IBu 0.81 1.00e-04 2.20e-03
Smp_111340.1 SmLINC00133-IBu 0.82 1.00e-04 2.10e-03
Smp_111340.1 SmLINC00282-IBu 0.85 4.70e-05 8.00e-04
Smp_111340.1 SmLINC00294-IBu 0.80 3.00e-04 3.20e-03
Smp_111340.1 SmLINC00369-IBu -0.82 1.00e-04 1.90e-03
Smp_111340.1 SmLINC00376-IBu -0.86 3.12e-05 6.00e-04
Smp_111340.1 SmLINC01084-IBu -0.83 1.00e-04 1.50e-03
Smp_111340.1 SmLINC01431-IBu -0.83 9.13e-05 1.30e-03
Smp_111340.1 SmLINC01637-IBu 0.82 1.00e-04 1.80e-03
Smp_111340.1 SmLINC02084-IBu -0.82 1.00e-04 1.80e-03
Smp_111340.1 SmLINC02255-IBu 0.94 6.91e-08 7.95e-06
Smp_111340.1 SmLINC02630-IBu 0.90 2.81e-06 1.00e-04
Smp_111340.1 SmLINC02657-IBu 0.95 3.98e-08 5.46e-06
Smp_111340.1 SmLINC03769-IBu 0.80 2.00e-04 2.90e-03
Smp_111340.1 SmLINC03849-IBu 0.86 2.82e-05 5.00e-04
Smp_111340.1 SmLINC03930-IBu 0.88 9.67e-06 2.00e-04
Smp_111340.1 SmLINC04421-IBu -0.86 3.29e-05 6.00e-04
Smp_111340.1 SmLINC05284-IBu 0.86 2.62e-05 5.00e-04
Smp_111340.1 SmLINC05604-IBu -0.80 2.00e-04 2.90e-03
Smp_111340.1 SmLINC05716-IBu 0.84 8.76e-05 1.20e-03
Smp_111340.1 SmLINC05720-IBu 0.80 2.00e-04 2.90e-03
Smp_111340.1 SmLINC06024-IBu -0.80 3.00e-04 3.40e-03
Smp_111340.1 SmLINC06128-IBu 0.80 3.00e-04 3.40e-03
Smp_111340.1 SmLINC06535-IBu 0.91 2.24e-06 9.11e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_111340.1 0 -0.73 -0.50 -5.92 -6.46
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111340.1 Smp_055340.2 -0.92 1.04e-06 5.51e-05
Smp_111340.1 Smp_157140.1 -0.91 1.82e-06 8.15e-05
Smp_111340.1 Smp_160230.1 0.96 1.04e-08 2.35e-06