Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_109340.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
Smp_109340.1 0 1.47 0.69 -10.22 -10.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109340.1 SmLINC03111-IBu 0.70 3.50e-03 1.60e-02
Smp_109340.1 SmLINC03116-IBu 0.54 3.73e-02 9.00e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_109340.1 0 1.47 0.69 -10.22 -10.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109340.1 SmLINC00026-IBu 0.86 3.36e-05 6.00e-04
Smp_109340.1 SmLINC00294-IBu 0.89 5.47e-06 1.00e-04
Smp_109340.1 SmLINC01462-IBu 0.83 1.00e-04 1.50e-03
Smp_109340.1 SmLINC01486-IBu 0.80 2.00e-04 2.90e-03
Smp_109340.1 SmLINC01637-IBu 0.83 1.00e-04 1.50e-03
Smp_109340.1 SmLINC03395-IBu 0.88 9.61e-06 2.00e-04
Smp_109340.1 SmLINC04106-IBu 0.80 3.00e-04 3.40e-03
Smp_109340.1 SmLINC04271-IBu 0.83 1.00e-04 1.50e-03
Smp_109340.1 SmLINC04366-IBu 0.81 1.00e-04 2.20e-03
Smp_109340.1 SmLINC05716-IBu 0.84 8.89e-05 1.20e-03
Smp_109340.1 SmLINC06490-IBu 0.81 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00378-IBu 0 0.65 -0.05 -4.62 -5.01
SmLINC00380-IBu 0 0.70 -0.39 -3.24 -4.62
SmLINC01179-IBu 0 0.87 0.04 -3.40 -3.45
SmLINC01268-IBu 0 1.32 -0.16 -3.78 -3.88
SmLINC01832-IBu 0 0.65 0.07 -2.99 -5.02
SmLINC02198-IBu 0 0.33 -0.29 -6.35 -11.80
SmLINC02322-IBu 0 3.00 3.04 -2.38 -2.45
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC04395-IBu 0 0.52 -0.35 -3.28 -4.47
SmLINC04441-IBu 0 0.43 -0.99 -4.09 -5.39
SmLINC04443-IBu 0 0.55 -0.36 -3.67 -9.70
SmLINC04914-IBu 0 0.61 -0.29 -3.56 -4.54
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_107590.1 0 4.34 2.46 -4.22 -4.22
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36
Smp_192030.1 0 1.02 1.31 -3.21 -4.10
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
Smp_201280.1 0 0.50 0.74 -4.14 -8.03
Smp_201390.1 0 0.48 -0.11 -6.75 -6.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109340.1 SmLINC00378-IBu 0.93 4.56e-07 3.08e-05
Smp_109340.1 SmLINC00380-IBu 0.90 2.67e-06 1.00e-04
Smp_109340.1 SmLINC01179-IBu 0.90 3.50e-06 1.00e-04
Smp_109340.1 SmLINC01268-IBu 0.91 1.53e-06 7.23e-05
Smp_109340.1 SmLINC01832-IBu 0.95 1.62e-08 3.15e-06
Smp_109340.1 SmLINC02198-IBu 0.92 1.07e-06 5.62e-05
Smp_109340.1 SmLINC02322-IBu 0.90 4.34e-06 1.00e-04
Smp_109340.1 SmLINC04259-IBu 0.90 4.73e-06 1.00e-04
Smp_109340.1 SmLINC04395-IBu 0.93 4.26e-07 2.94e-05
Smp_109340.1 SmLINC04441-IBu 0.90 3.69e-06 1.00e-04
Smp_109340.1 SmLINC04443-IBu 0.95 5.87e-08 7.53e-06
Smp_109340.1 SmLINC04914-IBu 0.91 1.72e-06 7.84e-05
Smp_086600.1 Smp_109340.1 0.91 1.87e-06 8.31e-05
Smp_107590.1 Smp_109340.1 0.91 1.59e-06 7.40e-05
Smp_111710.1 Smp_109340.1 0.90 4.10e-06 1.00e-04
Smp_192030.1 Smp_109340.1 0.91 2.29e-06 9.59e-05
Smp_109340.1 Smp_201240.1 0.92 7.60e-07 4.40e-05
Smp_201280.1 Smp_109340.1 0.92 6.32e-07 3.86e-05
Smp_201390.1 Smp_109340.1 0.93 3.84e-07 2.73e-05