Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_109240.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109240.1 SmLINC02255-IBu 0.88 1.15e-05 2.00e-04
Smp_109240.1 SmLINC02630-IBu 0.85 4.64e-05 8.00e-04
Smp_109240.1 SmLINC02657-IBu 0.87 2.25e-05 4.00e-04
Smp_109240.1 SmLINC02888-IBu 0.80 3.00e-04 3.30e-03
Smp_109240.1 SmLINC03769-IBu 0.88 1.17e-05 2.00e-04
Smp_109240.1 SmLINC03930-IBu 0.80 3.00e-04 3.40e-03
Smp_109240.1 SmLINC04957-IBu 0.86 3.18e-05 6.00e-04
Smp_109240.1 SmLINC06128-IBu 0.93 3.13e-07 2.27e-05
Smp_109240.1 SmLINC06535-IBu 0.80 2.00e-04 2.90e-03
Smp_109240.1 SmLINC06903-IBu 0.87 2.17e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC02325-IBu 0 -1.21 -1.93 -6.00 -7.20
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_017290.4 0 0.46 2.13 3.80 4.43
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_035310.1 0 -1.02 -2.20 -5.71 -5.71
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_042280.1 0 -0.52 0.36 2.84 3.46
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_063060.1 0 4.43 5.74 6.88 7.39
Smp_071050.1 0 1.37 1.31 3.40 4.43
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_072190.1 0 2.22 3.60 4.36 5.21
Smp_074200.1 0 -1.40 -4.07 -6.05 -6.98
Smp_081790.1 0 0.27 0.87 3.44 3.91
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_104000.1 0 0.62 1.49 3.28 4.39
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_114220.1 0 -0.84 -2.09 -5.04 -6.34
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_154250.1 0 -0.91 -2.50 -5.33 -5.48
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_161000.2 0 -1.02 -2.38 -7.73 -8.46
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54
Smp_182910.1 0 -1.24 -2.03 -6.37 -6.64
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52
Smp_213620.1 0 0.42 2.27 3.80 4.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109240.1 SmLINC00998-IBu 0.91 1.21e-06 6.13e-05
Smp_109240.1 SmLINC01234-IBu 0.93 5.01e-07 3.29e-05
Smp_109240.1 SmLINC02325-IBu 0.90 4.09e-06 1.00e-04
Smp_109240.1 SmLINC04598-IBu 0.90 4.28e-06 1.00e-04
Smp_109240.1 SmLINC06128-IBu 0.93 3.13e-07 2.37e-05
Smp_109240.1 SmLINC06240-IBu 0.93 2.59e-07 2.08e-05
Smp_109240.1 SmLINC06441-IBu 0.92 6.37e-07 3.89e-05
Smp_014400.3 Smp_109240.1 0.92 8.83e-07 4.89e-05
Smp_017290.4 Smp_109240.1 -0.91 2.31e-06 9.63e-05
Smp_018510.1 Smp_109240.1 0.90 3.40e-06 1.00e-04
Smp_034940.3 Smp_109240.1 0.96 3.01e-09 1.03e-06
Smp_109240.1 Smp_035090.2 0.92 1.08e-06 5.64e-05
Smp_109240.1 Smp_035310.1 0.90 2.87e-06 1.00e-04
Smp_038730.10 Smp_109240.1 0.92 1.13e-06 5.82e-05
Smp_109240.1 Smp_042160.2 0.91 1.24e-06 6.23e-05
Smp_109240.1 Smp_042280.1 -0.90 3.22e-06 1.00e-04
Smp_046930.1 Smp_109240.1 0.90 4.53e-06 1.00e-04
Smp_109240.1 Smp_051230.3 0.91 2.30e-06 9.62e-05
Smp_063060.1 Smp_109240.1 -0.91 2.45e-06 1.00e-04
Smp_071050.1 Smp_109240.1 -0.91 2.01e-06 8.74e-05
Smp_072110.1 Smp_109240.1 0.91 1.88e-06 8.34e-05
Smp_109240.1 Smp_072190.1 -0.90 2.83e-06 1.00e-04
Smp_109240.1 Smp_074200.1 0.92 1.03e-06 5.48e-05
Smp_081790.1 Smp_109240.1 -0.91 2.28e-06 9.55e-05
Smp_109240.1 Smp_088610.1 0.92 6.82e-07 4.08e-05
Smp_092320.1 Smp_109240.1 0.91 1.27e-06 6.33e-05
Smp_104000.1 Smp_109240.1 -0.92 7.74e-07 4.45e-05
Smp_110400.3 Smp_109240.1 0.92 6.22e-07 3.82e-05
Smp_109240.1 Smp_114220.1 0.90 2.68e-06 1.00e-04
Smp_109240.1 Smp_124150.1 0.94 6.33e-08 7.93e-06
Smp_125090.1 Smp_109240.1 0.91 1.63e-06 7.54e-05
Smp_133310.1 Smp_109240.1 0.93 2.32e-07 1.93e-05
Smp_109240.1 Smp_134410.1 0.90 2.54e-06 1.00e-04
Smp_109240.1 Smp_141630.1 0.91 1.24e-06 6.21e-05
Smp_145710.1 Smp_109240.1 0.92 7.97e-07 4.55e-05
Smp_154250.1 Smp_109240.1 0.91 1.84e-06 8.21e-05
Smp_109240.1 Smp_157450.1 0.91 1.42e-06 6.84e-05
Smp_109240.1 Smp_159900.1 0.91 1.64e-06 7.57e-05
Smp_109240.1 Smp_161000.2 0.92 5.25e-07 3.40e-05
Smp_109240.1 Smp_162370.1 0.91 1.46e-06 6.96e-05
Smp_109240.1 Smp_167350.1 0.92 1.16e-06 5.95e-05
Smp_109240.1 Smp_178530.1 0.92 7.14e-07 4.21e-05
Smp_109240.1 Smp_178620.1 0.90 4.56e-06 1.00e-04
Smp_179270.1 Smp_109240.1 0.94 8.32e-08 9.54e-06
Smp_109240.1 Smp_182910.1 0.91 2.01e-06 8.75e-05
Smp_109240.1 Smp_184750.1 0.90 3.86e-06 1.00e-04
Smp_109240.1 Smp_187350.1 0.90 4.38e-06 1.00e-04
Smp_195140.1 Smp_109240.1 0.94 1.42e-07 1.37e-05
Smp_109240.1 Smp_195160.1 0.93 4.22e-07 2.92e-05
Smp_109240.1 Smp_197110.1 0.92 5.22e-07 3.38e-05
Smp_109240.1 Smp_206130.1 0.90 3.36e-06 1.00e-04
Smp_109240.1 Smp_212290.1 0.91 1.35e-06 6.59e-05
Smp_109240.1 Smp_213620.1 -0.90 4.59e-06 1.00e-04