Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_108050.1 Data

Correlation between Smp_108050.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_108050.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_108050.1 SmLINC02039-IBu 0.82 1.00e-04 2.00e-03
Smp_108050.1 SmLINC02255-IBu 0.84 8.22e-05 1.20e-03
Smp_108050.1 SmLINC02630-IBu 0.83 9.46e-05 1.30e-03
Smp_108050.1 SmLINC02657-IBu 0.80 3.00e-04 3.30e-03
Smp_108050.1 SmLINC02678-IBu 0.87 1.83e-05 4.00e-04
Smp_108050.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_108050.1 SmLINC05989-IBu 0.89 5.41e-06 1.00e-04
Smp_108050.1 SmLINC06128-IBu 0.93 4.95e-07 3.12e-05
Smp_108050.1 SmLINC06892-IBu 0.85 4.37e-05 7.00e-04

Correlation between Smp_108050.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_108050.1 0.96 1.38e-08 2.83e-06
Smp_108050.1 Smp_055220.2 0.91 1.22e-06 6.14e-05
Smp_065580.1 Smp_108050.1 0.90 3.89e-06 1.00e-04
Smp_108050.1 Smp_085290.3 0.91 1.96e-06 8.60e-05
Smp_102670.1 Smp_108050.1 0.93 2.45e-07 2.00e-05
Smp_106390.1 Smp_108050.1 0.98 2.01e-11 4.25e-08
Smp_108050.1 Smp_133770.1 0.91 1.89e-06 8.37e-05
Smp_134410.1 Smp_108050.1 0.94 1.52e-07 1.44e-05
Smp_145810.2 Smp_108050.1 0.96 6.91e-09 1.78e-06
Smp_149670.1 Smp_108050.1 0.98 2.22e-11 4.53e-08
Smp_150690.2 Smp_108050.1 0.93 4.61e-07 3.10e-05
Smp_108050.1 Smp_153240.1 0.91 1.25e-06 6.24e-05
Smp_169190.1 Smp_108050.1 0.91 1.61e-06 7.49e-05
Smp_178240.1 Smp_108050.1 0.93 4.85e-07 3.21e-05
Smp_108050.1 Smp_184460.1 0.94 1.20e-07 1.22e-05
Smp_185360.1 Smp_108050.1 0.95 1.49e-08 2.98e-06
Smp_188900.1 Smp_108050.1 0.94 1.77e-07 1.60e-05
Smp_206150.1 Smp_108050.1 0.90 2.61e-06 1.00e-04