Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_107860.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_107860.1 0 0.34 -1.79 -7.61 -7.61

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_107860.1 SmLINC00282-IBu 0.80 3.00e-04 3.40e-03
Smp_107860.1 SmLINC00784-IBu 0.87 2.17e-05 4.00e-04
Smp_107860.1 SmLINC03848-IBu 0.84 6.90e-05 1.00e-03
Smp_107860.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_107860.1 SmLINC04366-IBu 0.82 1.00e-04 2.00e-03
Smp_107860.1 SmLINC05284-IBu 0.80 2.00e-04 3.10e-03
Smp_107860.1 SmLINC05720-IBu 0.90 3.96e-06 1.00e-04
Smp_107860.1 SmLINC06535-IBu 0.81 2.00e-04 2.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_107860.1 0 0.34 -1.79 -7.61 -7.61
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184760.1 Smp_107860.1 0.93 2.83e-07 2.21e-05
Smp_203100.1 Smp_107860.1 0.90 4.75e-06 1.00e-04