Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_107750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_107750.1 0 0.44 0.15 6.69 7.24

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_107750.1 SmLINC00369-IBu 0.84 8.84e-05 1.20e-03
Smp_107750.1 SmLINC00525-IBu 0.83 1.00e-04 1.40e-03
Smp_107750.1 SmLINC00633-IBu 0.85 4.31e-05 7.00e-04
Smp_107750.1 SmLINC01084-IBu 0.83 9.42e-05 1.30e-03
Smp_107750.1 SmLINC01122-IBu 0.81 2.00e-04 2.30e-03
Smp_107750.1 SmLINC01431-IBu 0.82 1.00e-04 1.80e-03
Smp_107750.1 SmLINC01432-IBu 0.92 1.12e-06 5.59e-05
Smp_107750.1 SmLINC01569-IBu 0.82 1.00e-04 1.80e-03
Smp_107750.1 SmLINC04421-IBu 0.89 5.43e-06 1.00e-04
Smp_107750.1 SmLINC04423-IBu 0.87 1.65e-05 3.00e-04
Smp_107750.1 SmLINC04478-IBu 0.89 6.86e-06 2.00e-04
Smp_107750.1 SmLINC04521-IBu 0.91 1.43e-06 6.64e-05
Smp_107750.1 SmLINC05147-IBu 0.87 1.53e-05 3.00e-04
Smp_107750.1 SmLINC05604-IBu 0.85 4.62e-05 8.00e-04
Smp_107750.1 SmLINC06024-IBu 0.85 4.13e-05 7.00e-04
Smp_107750.1 SmLINC06145-IBu 0.93 3.38e-07 2.39e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_107750.1 0 0.44 0.15 6.69 7.24
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_177580.1 0 3.28 2.12 11.83 11.79
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.2 Smp_107750.1 0.90 3.24e-06 1.00e-04
Smp_033260.1 Smp_107750.1 0.91 2.07e-06 8.93e-05
Smp_107750.1 Smp_123550.1 0.90 3.04e-06 1.00e-04
Smp_107750.1 Smp_156930.1 0.96 6.88e-09 1.78e-06
Smp_166860.1 Smp_107750.1 0.91 2.33e-06 9.71e-05
Smp_177580.1 Smp_107750.1 0.93 4.02e-07 2.82e-05
Smp_194860.1 Smp_107750.1 0.90 4.49e-06 1.00e-04
Smp_201910.1 Smp_107750.1 0.97 9.42e-10 4.90e-07
Smp_203090.1 Smp_107750.1 0.92 1.08e-06 5.66e-05