Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_106750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_106750.1 0 0.07 1.73 -5.83 -8.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_106750.1 SmLINC00372-IBu 0.91 1.28e-06 6.14e-05
Smp_106750.1 SmLINC01316-IBu 0.87 2.32e-05 4.00e-04
Smp_106750.1 SmLINC02026-IBu 0.86 3.63e-05 6.00e-04
Smp_106750.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_106750.1 SmLINC04430-IBu 0.93 4.80e-07 3.06e-05
Smp_106750.1 SmLINC05559-IBu 0.88 1.03e-05 2.00e-04
Smp_106750.1 SmLINC06490-IBu 0.91 2.47e-06 9.77e-05
Smp_106750.1 SmLINC06700-IBu 0.90 4.71e-06 1.00e-04
Smp_106750.1 SmLINC06836-IBu 0.89 8.58e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_106750.1 Smp_010140.2 0.93 3.75e-07 2.69e-05
Smp_106750.1 Smp_032120.1 0.91 1.91e-06 8.44e-05
Smp_098890.1 Smp_106750.1 0.96 7.96e-09 1.96e-06
Smp_106750.1 Smp_138080.1 0.90 3.37e-06 1.00e-04
Smp_106750.1 Smp_159070.3 0.91 1.41e-06 6.81e-05
Smp_106750.1 Smp_168800.1 0.90 4.58e-06 1.00e-04
Smp_106750.1 Smp_194060.1 0.95 4.60e-08 6.38e-06
Smp_106750.1 Smp_200120.1 0.97 1.06e-09 5.30e-07
Smp_106750.1 Smp_205060.1 0.90 2.83e-06 1.00e-04