Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_106390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_106390.1 SmLINC02039-IBu 0.86 2.61e-05 5.00e-04
Smp_106390.1 SmLINC02678-IBu 0.83 1.00e-04 1.40e-03
Smp_106390.1 SmLINC02888-IBu 0.82 1.00e-04 2.10e-03
Smp_106390.1 SmLINC05989-IBu 0.86 2.50e-05 5.00e-04
Smp_106390.1 SmLINC06128-IBu 0.89 5.59e-06 1.00e-04
Smp_106390.1 SmLINC06892-IBu 0.88 1.02e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00674-IBu 0 -2.62 -2.93 -7.07 -6.23
SmLINC01707-IBu 0 -1.39 -3.43 -3.89 -3.93
SmLINC05670-IBu 0 -3.35 -5.02 -2.57 -4.14
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_060420.3 0 -1.56 -2.67 -4.56 -5.71
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_182880.1 0 -2.14 -2.31 -8.86 -9.55
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_106390.1 SmLINC00674-IBu 0.90 3.52e-06 1.00e-04
Smp_106390.1 SmLINC01707-IBu 0.90 3.28e-06 1.00e-04
Smp_106390.1 SmLINC05670-IBu 0.91 2.28e-06 9.55e-05
Smp_003770.1 Smp_106390.1 0.92 7.30e-07 4.27e-05
Smp_106390.1 Smp_004230.1 0.90 2.75e-06 1.00e-04
Smp_106390.1 Smp_005860.1 0.98 3.71e-11 6.25e-08
Smp_106390.1 Smp_005860.3 0.93 2.35e-07 1.95e-05
Smp_106390.1 Smp_006560.1 0.93 2.08e-07 1.79e-05
Smp_009390.1 Smp_106390.1 0.90 3.54e-06 1.00e-04
Smp_014400.5 Smp_106390.1 0.95 2.73e-08 4.48e-06
Smp_016200.1 Smp_106390.1 0.91 1.93e-06 8.51e-05
Smp_106390.1 Smp_018880.1 0.96 4.72e-09 1.39e-06
Smp_106390.1 Smp_019750.2 0.94 6.49e-08 8.06e-06
Smp_106390.1 Smp_021730.1 0.90 3.38e-06 1.00e-04
Smp_106390.1 Smp_022430.1 0.94 1.67e-07 1.54e-05
Smp_106390.1 Smp_026450.1 0.93 3.05e-07 2.33e-05
Smp_106390.1 Smp_028990.2 0.96 6.28e-09 1.67e-06
Smp_106390.1 Smp_033000.1 0.90 4.33e-06 1.00e-04
Smp_106390.1 Smp_033610.1 0.98 3.62e-11 6.16e-08
Smp_036400.2 Smp_106390.1 0.91 1.83e-06 8.17e-05
Smp_106390.1 Smp_037020.1 0.94 9.87e-08 1.07e-05
Smp_106390.1 Smp_038560.6 0.95 2.99e-08 4.76e-06
Smp_042160.1 Smp_106390.1 0.94 1.83e-07 1.64e-05
Smp_106390.1 Smp_051230.3 0.91 1.69e-06 7.75e-05
Smp_106390.1 Smp_052060.1 0.94 1.51e-07 1.43e-05
Smp_106390.1 Smp_055210.1 0.92 9.55e-07 5.16e-05
Smp_106390.1 Smp_055220.2 0.90 3.62e-06 1.00e-04
Smp_106390.1 Smp_057060.1 0.92 5.34e-07 3.44e-05
Smp_106390.1 Smp_057790.1 0.90 3.47e-06 1.00e-04
Smp_106390.1 Smp_059930.1 0.91 1.23e-06 6.18e-05
Smp_106390.1 Smp_060420.3 0.90 3.03e-06 1.00e-04
Smp_106390.1 Smp_061580.1 0.92 1.03e-06 5.46e-05
Smp_106390.1 Smp_061870.1 0.91 1.57e-06 7.36e-05
Smp_106390.1 Smp_061940.1 0.93 2.58e-07 2.07e-05
Smp_106390.1 Smp_071380.2 0.91 2.25e-06 9.47e-05
Smp_106390.1 Smp_074570.1 0.93 2.40e-07 1.97e-05
Smp_106390.1 Smp_079220.1 0.90 2.55e-06 1.00e-04
Smp_106390.1 Smp_085290.3 0.94 1.53e-07 1.45e-05
Smp_106390.1 Smp_097750.1 0.96 2.54e-09 9.29e-07
Smp_100790.1 Smp_106390.1 0.90 2.75e-06 1.00e-04
Smp_106390.1 Smp_102670.1 0.93 3.21e-07 2.42e-05
Smp_106390.1 Smp_105610.1 0.92 1.15e-06 5.90e-05
Smp_106390.1 Smp_108050.1 0.98 2.01e-11 4.25e-08
Smp_106390.1 Smp_110400.3 0.92 6.79e-07 4.06e-05
Smp_106390.1 Smp_113760.1 0.94 6.21e-08 7.82e-06
Smp_106390.1 Smp_114740.1 0.90 2.75e-06 1.00e-04
Smp_106390.1 Smp_114910.1 0.94 1.47e-07 1.41e-05
Smp_106390.1 Smp_120920.3 0.96 9.81e-09 2.25e-06
Smp_106390.1 Smp_133310.1 0.91 1.64e-06 7.57e-05
Smp_106390.1 Smp_133770.1 0.92 6.74e-07 4.04e-05
Smp_106390.1 Smp_134410.1 0.92 1.08e-06 5.63e-05
Smp_106390.1 Smp_145710.1 0.93 3.05e-07 2.33e-05
Smp_106390.1 Smp_145810.2 0.96 2.60e-09 9.44e-07
Smp_106390.1 Smp_148800.1 0.95 5.12e-08 6.86e-06
Smp_106390.1 Smp_149190.1 0.93 4.44e-07 3.02e-05
Smp_106390.1 Smp_149670.1 0.95 3.71e-08 5.52e-06
Smp_150690.2 Smp_106390.1 0.96 2.51e-09 9.22e-07
Smp_106390.1 Smp_153240.1 0.93 3.11e-07 2.36e-05
Smp_106390.1 Smp_154020.1 0.95 3.87e-08 5.68e-06
Smp_106390.1 Smp_154300.1 0.93 5.02e-07 3.29e-05
Smp_106390.1 Smp_157310.1 0.93 2.03e-07 1.75e-05
Smp_106390.1 Smp_162370.1 0.90 4.79e-06 1.00e-04
Smp_168380.1 Smp_106390.1 0.90 4.54e-06 1.00e-04
Smp_106390.1 Smp_169190.1 0.90 3.70e-06 1.00e-04
Smp_106390.1 Smp_178240.1 0.95 3.96e-08 5.77e-06
Smp_106390.1 Smp_182770.1 0.95 4.29e-08 6.09e-06
Smp_182880.1 Smp_106390.1 0.91 1.97e-06 8.62e-05
Smp_106390.1 Smp_184460.1 0.95 2.72e-08 4.46e-06
Smp_106390.1 Smp_184750.1 0.93 5.15e-07 3.35e-05
Smp_185180.1 Smp_106390.1 0.94 1.26e-07 1.27e-05
Smp_185220.1 Smp_106390.1 0.94 9.31e-08 1.03e-05
Smp_106390.1 Smp_185360.1 0.97 7.25e-10 4.15e-07
Smp_106390.1 Smp_188900.1 0.93 3.00e-07 2.30e-05
Smp_106390.1 Smp_190390.1 0.91 1.27e-06 6.33e-05
Smp_192880.1 Smp_106390.1 0.92 5.20e-07 3.37e-05
Smp_106390.1 Smp_194040.1 0.95 5.07e-08 6.82e-06
Smp_106390.1 Smp_195160.1 0.92 9.58e-07 5.17e-05
Smp_202700.1 Smp_106390.1 0.95 2.22e-08 3.90e-06
Smp_106390.1 Smp_205080.1 0.92 7.75e-07 4.46e-05
Smp_106390.1 Smp_205900.1 0.90 3.44e-06 1.00e-04
Smp_106390.1 Smp_205970.1 0.92 5.39e-07 3.46e-05